- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: D.213, G.217, D.243, Y.268, G.269
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.243, A:Y.268, H2O.1, H2O.2
CA.7: 5 residues within 4Å:- Chain B: D.213, G.217, D.243, Y.268, G.269
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.243, B:Y.268, H2O.24, H2O.25
CA.11: 5 residues within 4Å:- Chain C: D.213, G.217, D.243, Y.268, G.269
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.243, C:Y.268, H2O.46, H2O.48
CA.15: 5 residues within 4Å:- Chain D: D.213, G.217, D.243, Y.268, G.269
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.243, D:Y.268, H2O.69, H2O.70
- 4 x LNV: 5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-D-glycero-D-galacto-non-2-enonic acid(Non-covalent)
LNV.4: 17 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, R.75, W.98, I.142, R.144, E.147, A.166, E.196, E.197, R.212, N.214, Y.268, R.292, Y.326
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:W.98, A:I.142
- Hydrogen bonds: A:R.71, A:W.98, A:W.98, A:R.144, A:E.197, A:R.212, A:R.212, A:Y.326
- Water bridges: A:R.37, A:D.70, A:R.75, A:R.144, A:E.197
- Salt bridges: A:R.37, A:E.38, A:D.70, A:E.147, A:R.212, A:R.292
LNV.8: 17 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, R.75, W.98, I.142, R.144, E.147, A.166, E.196, E.197, R.212, N.214, Y.268, R.292, Y.326
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:W.98, B:I.142
- Hydrogen bonds: B:R.71, B:W.98, B:W.98, B:R.144, B:E.197, B:R.212, B:R.212, B:Y.326
- Water bridges: B:R.37, B:D.70, B:R.75, B:R.144, B:E.197
- Salt bridges: B:R.37, B:E.38, B:D.70, B:E.147, B:R.212, B:R.292
LNV.12: 17 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, R.75, W.98, I.142, R.144, E.147, A.166, E.196, E.197, R.212, N.214, Y.268, R.292, Y.326
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:W.98, C:I.142
- Hydrogen bonds: C:R.71, C:W.98, C:W.98, C:R.144, C:E.197, C:R.212, C:R.212, C:Y.326
- Water bridges: C:R.37, C:D.70, C:R.75, C:R.144, C:E.197
- Salt bridges: C:R.37, C:E.38, C:D.70, C:E.147, C:R.212, C:R.292
LNV.16: 17 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, R.75, W.98, I.142, R.144, E.147, A.166, E.196, E.197, R.212, N.214, Y.268, R.292, Y.326
21 PLIP interactions:21 interactions with chain D- Hydrophobic interactions: D:W.98, D:I.142
- Hydrogen bonds: D:R.71, D:W.98, D:W.98, D:R.144, D:E.197, D:R.212, D:R.212, D:Y.326
- Water bridges: D:R.37, D:D.70, D:R.75, D:R.144, D:E.197
- Salt bridges: D:R.37, D:E.38, D:D.70, D:E.147, D:R.212, D:R.292
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vavricka, C.J. et al., Structural and functional analysis of laninamivir and its octanoate prodrug reveals group specific mechanisms for influenza NA inhibition. Plos Pathog. (2011)
- Release Date
- 2011-11-16
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x LNV: 5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-D-glycero-D-galacto-non-2-enonic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vavricka, C.J. et al., Structural and functional analysis of laninamivir and its octanoate prodrug reveals group specific mechanisms for influenza NA inhibition. Plos Pathog. (2011)
- Release Date
- 2011-11-16
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
B