SMTL ID : 3sdf.1

Crystal Structure of C-lobe of Bovine lactoferrin Complexed with Lipoteichoic acid at 2.1 A Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: G.131, L.132, N.135, T.326, A.327, N.330 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.330

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 9 residues within 4Å: Chain A: S.76, S.77, L.93, N.204, D.205, W.208, E.209, E.214, Q.244 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.77

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 1 residues within 4Å: Chain A: E.318 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.318, A:E.318 ZN.4: 1 residues within 4Å: Chain A: H.247 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.247

1 x FE: FE (III) ION(Non-covalent)

FE.5: 5 residues within 4Å: Chain A: D.54, Y.92, Y.185, H.254 Ligands: CO3.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.54, A:Y.92, A:Y.185, A:H.254

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.6: 10 residues within 4Å: Chain A: D.54, Y.92, T.118, R.122, T.123, A.124, G.125, Y.185, H.254 Ligands: FE.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.122

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 3 residues within 4Å: Chain A: K.100, R.229, R.237 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.229, A:R.237, A:R.237 Salt bridges: A:R.229, A:R.237

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.8: 6 residues within 4Å: Chain A: Q.23, S.24, N.27, H.272, Q.273, L.276 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.27, A:Q.273 Water bridges: A:H.272

1 x LTC: (2S)-1-({3-O-[2-(acetylamino)-4-amino-2,4,6-trideoxy-beta-D-galactopyranosyl]-alpha-D-glucopyranosyl}oxy)-3-(heptanoyloxy)propan-2-yl (7Z)-pentadec-7-enoate(Non-covalent)

LTC.9: 14 residues within 4Å: Chain A: K.78, H.79, P.88, T.89, E.90, G.91, V.250, A.251, P.252, E.318, Y.319, L.320, G.321, T.322 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.88, A:V.250, A:E.318, A:T.322 Hydrogen bonds: A:H.79, A:T.89, A:A.251, A:Y.319 Water bridges: A:E.323 Salt bridges: A:K.78, A:H.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shukla, P.K. et al., Crystal Structure of C-lobe of Bovine lactoferrin Complexed with Lipoteichoic acid at 2.1 A Resolution. To be Published

Release Date

2011-06-29

Peptides

Lactotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactotransferrin

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