SMTL ID : 3sjp.1

Structural characterization of a GII.4 2004 norovirus variant (TCH05)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: H.240 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.240, H2O.6, H2O.6, H2O.6, H2O.8 ZN.2: 1 residues within 4Å: Chain A: Q.86 No protein-ligand interaction detected (PLIP) ZN.3: 3 residues within 4Å: Chain A: D.251, V.252, H.272 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.272, H2O.6 ZN.4: 1 residues within 4Å: Chain A: E.244 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.244, A:E.244, H2O.5, H2O.6, H2O.7 ZN.5: 2 residues within 4Å: Chain A: H.127, D.150 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.127, A:D.150, A:D.150, H2O.5, H2O.7 ZN.6: 1 residues within 4Å: Chain A: H.72 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.72, H2O.4, H2O.5, H2O.7 ZN.7: 3 residues within 4Å: Chain A: R.119, D.121, E.156 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:R.119, A:D.121, A:E.156, A:E.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shanker, S. et al., Structural Analysis of Histo-Blood Group Antigen Binding Specificity in a Norovirus GII.4 Epidemic Variant: Implications for Epochal Evolution. J.Virol. (2011)

Release Date

2011-07-13

Peptides

Capsid: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Capsid

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