SMTL ID : 3sld.2 (5 other biounits)

Structural characterization of a GII.4 2004 norovirus variant (TCH05) bound to A trisaccharide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

homo-dimer

Ligands

2 x GAL- FUC- A2G: alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose

GAL-FUC-A2G.1: 8 residues within 4Å: Chain A: S.123, T.124, R.125, H.127, D.154 Chain B: K.128, G.223, Y.224 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:K.128, B:G.223, A:T.124, A:R.125, A:R.125, A:D.154 Hydrophobic interactions: B:Y.224 GAL-FUC-A2G.2: 9 residues within 4Å: Chain A: K.128, S.222, G.223, Y.224 Chain B: S.123, T.124, R.125, H.127, D.154 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:K.128, A:S.222, A:S.222, A:G.223, B:R.125, B:R.125, B:D.154 Hydrophobic interactions: A:Y.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shanker, S. et al., Structural Analysis of Histo-Blood Group Antigen Binding Specificity in a Norovirus GII.4 Epidemic Variant: Implications for Epochal Evolution. J.Virol. (2011)

Release Date

2011-07-13

Peptides

Capsid: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

Capsid

Related Entries With Identical Sequence