SMTL ID : 3sln.4 (5 other biounits)

Structural characterization of a GII.4 2004 norovirus variant (TCH05) bound to H pentasaccharide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.84 Å

Oligo State

homo-dimer

Ligands

1 x BGC- GAL- NAG- GAL- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-NAG-GAL-FUC.1: 4 residues within 4Å: Chain A: S.123, T.124, R.125, D.154 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.125, A:R.125, A:D.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shanker, S. et al., Structural Analysis of Histo-Blood Group Antigen Binding Specificity in a Norovirus GII.4 Epidemic Variant: Implications for Epochal Evolution. J.Virol. (2011)

Release Date

2011-07-13

Peptides

Capsid: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
H

Capsid

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