SMTL ID : 3smq.1

Crystal structure of protein arginine methyltransferase 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x TDU: 1-(1,2,3-benzothiadiazol-6-yl)-3-[2-(cyclohex-1-en-1-yl)ethyl]urea(Non-covalent)

TDU.1: 15 residues within 4Å: Chain A: V.179, D.181, K.184, H.185, R.188, V.212, E.214, L.216, T.258, A.259, L.295 Chain B: G.37, E.40, E.41 Ligands: UNX.21 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:K.184, A:K.184, A:L.216, B:E.40 Hydrogen bonds: A:R.188, A:E.214, A:E.214 TDU.13: 15 residues within 4Å: Chain A: G.37, E.40, E.41 Chain B: V.179, D.181, K.184, H.185, R.188, V.212, E.214, L.216, T.258, A.259, L.295 Ligands: UNX.9 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:K.184, B:K.184, B:L.216, A:E.40 Hydrogen bonds: B:R.188, B:E.214, B:E.214, B:T.258

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: S.180, S.255, M.256 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: S.180, S.255, M.256 Ligand excluded by PLIP

20 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 1 residues within 4Å: Chain A: R.253 Ligand excluded by PLIP UNX.4: 3 residues within 4Å: Chain A: H.39, G.74, T.75 Ligand excluded by PLIP UNX.5: 1 residues within 4Å: Chain A: H.126 Ligand excluded by PLIP UNX.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.7: 3 residues within 4Å: Chain A: G.72, D.94, Q.95 Ligand excluded by PLIP UNX.8: 2 residues within 4Å: Chain A: S.284, T.285 Ligand excluded by PLIP UNX.9: 2 residues within 4Å: Chain A: E.41 Ligands: TDU.13 Ligand excluded by PLIP UNX.10: 3 residues within 4Å: Chain A: K.131, A.162, K.163 Ligand excluded by PLIP UNX.11: 1 residues within 4Å: Chain A: K.199 Ligand excluded by PLIP UNX.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.15: 1 residues within 4Å: Chain B: R.253 Ligand excluded by PLIP UNX.16: 3 residues within 4Å: Chain B: H.39, G.74, T.75 Ligand excluded by PLIP UNX.17: 1 residues within 4Å: Chain B: H.126 Ligand excluded by PLIP UNX.18: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.19: 3 residues within 4Å: Chain B: G.72, D.94, Q.95 Ligand excluded by PLIP UNX.20: 2 residues within 4Å: Chain B: S.284, T.285 Ligand excluded by PLIP UNX.21: 2 residues within 4Å: Chain B: E.41 Ligands: TDU.1 Ligand excluded by PLIP UNX.22: 3 residues within 4Å: Chain B: K.131, A.162, K.163 Ligand excluded by PLIP UNX.23: 1 residues within 4Å: Chain B: K.199 Ligand excluded by PLIP UNX.24: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siarheyeva, A. et al., An allosteric inhibitor of protein arginine methyltransferase 3. Structure (2012)

Release Date

2011-08-31

Peptides

Protein arginine N-methyltransferase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein arginine N-methyltransferase 3

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