SMTL ID : 3t5g.1

Structure of fully modified farnesylated Rheb in complex with PDE6D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 18 residues within 4Å: Chain A: Y.14, R.15, S.16, V.17, G.18, K.19, S.20, S.21, F.31, Y.35, N.119, K.120, D.122, L.123, S.149, A.150, K.151 Ligands: MG.2 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:S.16, A:V.17, A:G.18, A:K.19, A:S.20, A:S.21, A:S.21, A:N.119, A:K.120, A:K.120, A:S.149, A:A.150 Water bridges: A:K.19, A:S.20, A:D.33, A:D.33, A:K.151, A:K.151 Salt bridges: A:K.19, A:D.122 pi-Stacking: A:F.31, A:F.31 pi-Cation interactions: A:K.120

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: S.20 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.20, H2O.8, H2O.8, H2O.9, H2O.9

1 x FAR: FARNESYL(Non-covalent)

FAR.3: 16 residues within 4Å: Chain A: S.180, C.181 Chain B: L.19, M.22, L.24, L.40, I.55, L.65, Q.80, W.92, I.131, T.133, F.135, S.145, L.149, Y.151 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.19, B:L.24, B:L.40, B:I.55, B:L.65, B:W.92, B:F.135, B:L.149, B:Y.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ismail, S.A. et al., Arl2-GTP and Arl3-GTP regulate a GDI-like transport system for farnesylated cargo. Nat.Chem.Biol. (2011)

Release Date

2011-10-26

Peptides

GTP-binding protein Rheb: A
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GTP-binding protein Rheb

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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