- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 4 x HEC: HEME C(Covalent)
- 24 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.5: 10 residues within 4Å:- Chain A: R.236
- Chain B: H.3
- Chain D: L.165, L.283, T.287, F.288
- Ligands: SO4.17, GOL.35, GOL.76, LDA.130
Ligand excluded by PLIPLDA.6: 3 residues within 4Å:- Chain A: F.22
- Chain C: F.246, F.254
Ligand excluded by PLIPLDA.50: 9 residues within 4Å:- Chain B: L.29, R.33
- Chain D: F.202, G.205, F.206, F.256
- Ligands: BCB.89, LDA.93, HTO.140
Ligand excluded by PLIPLDA.51: 5 residues within 4Å:- Chain B: A.5, L.6, A.7, L.15
- Ligands: HTO.70
Ligand excluded by PLIPLDA.52: 5 residues within 4Å:- Chain B: Q.14, L.15, Y.18, A.19
- Ligands: LDA.53
Ligand excluded by PLIPLDA.53: 3 residues within 4Å:- Chain B: Y.18
- Ligands: LDA.52, LDA.95
Ligand excluded by PLIPLDA.54: 12 residues within 4Å:- Chain B: R.34, Y.41, P.42, V.59, Y.60, L.62, P.63, Y.64, P.79, R.80, R.81
- Ligands: HTO.69
Ligand excluded by PLIPLDA.93: 8 residues within 4Å:- Chain B: W.25
- Chain C: Y.29
- Chain D: I.254, G.255, F.256
- Ligands: LDA.50, LDA.94, MQ9.118
Ligand excluded by PLIPLDA.94: 4 residues within 4Å:- Chain C: Y.29
- Ligands: BCB.89, LDA.93, MQ9.118
Ligand excluded by PLIPLDA.95: 16 residues within 4Å:- Chain B: W.17
- Chain C: D.60, F.62
- Chain D: Y.195, Y.196, C.197, P.198, G.201, W.295, C.296, H.299, G.300, A.301
- Ligands: LDA.53, BCB.89, GOL.115
Ligand excluded by PLIPLDA.96: 5 residues within 4Å:- Chain C: W.59, P.61, I.64, Y.148, I.150
Ligand excluded by PLIPLDA.97: 9 residues within 4Å:- Chain C: L.75, G.76, A.77, Q.87, T.90, V.91, W.142
- Ligands: LDA.98, HTO.105
Ligand excluded by PLIPLDA.98: 7 residues within 4Å:- Chain C: L.75, G.76, A.77, L.137
- Ligands: LDA.97, LDA.101, GOL.113
Ligand excluded by PLIPLDA.99: 5 residues within 4Å:- Chain C: L.75, L.137, G.140
- Ligands: GOL.113, GOL.116
Ligand excluded by PLIPLDA.100: 4 residues within 4Å:- Chain C: R.231, F.235, N.239, L.242
Ligand excluded by PLIPLDA.101: 5 residues within 4Å:- Chain C: L.94, C.122, I.125, C.129
- Ligands: LDA.98
Ligand excluded by PLIPLDA.123: 5 residues within 4Å:- Chain D: F.33, Y.34, S.35, Y.36, W.37
Ligand excluded by PLIPLDA.124: 7 residues within 4Å:- Chain D: W.23, S.54, L.122, G.125, S.126, S.133
- Ligands: SO4.132
Ligand excluded by PLIPLDA.125: 4 residues within 4Å:- Chain D: W.146, A.150, F.153
- Ligands: SO4.134
Ligand excluded by PLIPLDA.126: 14 residues within 4Å:- Chain B: V.27, Y.31
- Chain C: N.199, P.200, G.201
- Chain D: G.141, T.142, H.143, W.146, R.265, W.268, F.269
- Ligands: SO4.131, SO4.134
Ligand excluded by PLIPLDA.127: 7 residues within 4Å:- Chain D: L.67, I.68, F.71, N.72, A.75, W.112
- Ligands: GOL.148
Ligand excluded by PLIPLDA.128: 7 residues within 4Å:- Chain D: I.104, P.105, P.106, L.107, H.108, G.111
- Ligands: GOL.148
Ligand excluded by PLIPLDA.129: 10 residues within 4Å:- Chain A: G.237, K.238
- Chain D: Y.100, G.101, M.102, G.103, A.164, L.165, G.167
- Ligands: GOL.35
Ligand excluded by PLIPLDA.130: 4 residues within 4Å:- Chain B: I.12, V.16
- Ligands: LDA.5, GOL.76
Ligand excluded by PLIP- 1 x DGA: DIACYL GLYCEROL(Covalent)
- 41 x SO4: SULFATE ION(Non-functional Binders)
SO4.8: 4 residues within 4Å:- Chain A: R.54, Q.57, R.177
- Ligands: HTO.28
Ligand excluded by PLIPSO4.9: 5 residues within 4Å:- Chain A: T.227, A.228
- Chain D: L.294, K.298
- Ligands: GOL.141
Ligand excluded by PLIPSO4.10: 3 residues within 4Å:- Chain A: T.181, H.182
- Ligands: GOL.39
Ligand excluded by PLIPSO4.11: 5 residues within 4Å:- Chain A: V.81, E.132, R.135
- Ligands: SO4.25, GOL.43
Ligand excluded by PLIPSO4.12: 1 residues within 4Å:- Chain A: R.313
Ligand excluded by PLIPSO4.13: 5 residues within 4Å:- Chain A: T.211, N.216, K.218, R.219
- Ligands: GOL.36
Ligand excluded by PLIPSO4.14: 5 residues within 4Å:- Chain A: S.340, R.341, L.342, Q.343, D.344
Ligand excluded by PLIPSO4.15: 2 residues within 4Å:- Chain A: V.65, K.66
Ligand excluded by PLIPSO4.16: 2 residues within 4Å:- Chain A: P.63, A.64
Ligand excluded by PLIPSO4.17: 3 residues within 4Å:- Chain A: G.233, E.239
- Ligands: LDA.5
Ligand excluded by PLIPSO4.18: 1 residues within 4Å:- Ligands: SO4.23
Ligand excluded by PLIPSO4.19: 3 residues within 4Å:- Chain A: L.62, E.99
- Ligands: GOL.47
Ligand excluded by PLIPSO4.20: 4 residues within 4Å:- Chain A: P.45, V.48, K.49, K.52
Ligand excluded by PLIPSO4.21: 4 residues within 4Å:- Chain A: D.296, M.299, N.300
- Ligands: SO4.24
Ligand excluded by PLIPSO4.22: 5 residues within 4Å:- Chain A: C.21, F.22, E.23
- Chain C: W.255, R.257
Ligand excluded by PLIPSO4.23: 3 residues within 4Å:- Chain A: E.113, N.114
- Ligands: SO4.18
Ligand excluded by PLIPSO4.24: 4 residues within 4Å:- Chain A: W.141, D.296
- Ligands: SO4.21, GOL.37
Ligand excluded by PLIPSO4.25: 7 residues within 4Å:- Chain A: R.135, A.136, T.139, N.140, I.351
- Ligands: SO4.11, GOL.43
Ligand excluded by PLIPSO4.55: 5 residues within 4Å:- Chain B: Y.117, E.119, E.122, R.233, K.237
Ligand excluded by PLIPSO4.56: 2 residues within 4Å:- Chain B: K.131, R.175
Ligand excluded by PLIPSO4.57: 6 residues within 4Å:- Chain B: R.33, R.37, Y.41, L.43, E.61
- Chain D: R.251
Ligand excluded by PLIPSO4.58: 3 residues within 4Å:- Chain B: L.30, R.34
- Ligands: HTO.69
Ligand excluded by PLIPSO4.59: 3 residues within 4Å:- Chain B: R.153, G.154, L.155
Ligand excluded by PLIPSO4.60: 6 residues within 4Å:- Chain B: D.202, K.204
- Chain D: Y.7, Q.9
- Ligands: SO4.67, GOL.82
Ligand excluded by PLIPSO4.61: 3 residues within 4Å:- Chain B: A.160, D.161, G.162
Ligand excluded by PLIPSO4.62: 5 residues within 4Å:- Chain B: V.124, A.126, G.130, K.131, A.132
Ligand excluded by PLIPSO4.63: 4 residues within 4Å:- Chain B: L.22, W.25, T.26, L.30
Ligand excluded by PLIPSO4.64: 4 residues within 4Å:- Chain B: N.106, P.107, Q.217, Y.248
Ligand excluded by PLIPSO4.65: 4 residues within 4Å:- Chain B: L.224, Q.225, S.226, R.227
Ligand excluded by PLIPSO4.66: 3 residues within 4Å:- Chain B: H.9
- Chain D: K.298
- Ligands: GOL.141
Ligand excluded by PLIPSO4.67: 5 residues within 4Å:- Chain B: D.202, K.204
- Chain D: Y.3
- Ligands: SO4.60, GOL.82
Ligand excluded by PLIPSO4.102: 5 residues within 4Å:- Chain C: V.26, G.27, P.28, Y.29
- Ligands: MQ9.118
Ligand excluded by PLIPSO4.103: 6 residues within 4Å:- Chain B: L.70, P.71, H.72, G.73
- Chain C: K.205
- Ligands: GOL.81
Ligand excluded by PLIPSO4.131: 5 residues within 4Å:- Chain C: N.199
- Chain D: H.143, R.265
- Ligands: GOL.72, LDA.126
Ligand excluded by PLIPSO4.132: 6 residues within 4Å:- Chain D: W.23, Y.50, G.52, A.53, S.54
- Ligands: LDA.124
Ligand excluded by PLIPSO4.133: 5 residues within 4Å:- Chain B: T.211, L.246
- Chain D: A.1, R.226
- Ligands: HTO.104
Ligand excluded by PLIPSO4.134: 5 residues within 4Å:- Chain D: Y.132, T.142, W.146
- Ligands: LDA.125, LDA.126
Ligand excluded by PLIPSO4.135: 2 residues within 4Å:- Chain D: Y.308, L.309
Ligand excluded by PLIPSO4.136: 4 residues within 4Å:- Chain D: A.307, Y.308, L.309, P.310
Ligand excluded by PLIPSO4.137: 3 residues within 4Å:- Chain D: Y.100, I.104, P.106
Ligand excluded by PLIPSO4.138: 2 residues within 4Å:- Chain D: Y.132, R.136
Ligand excluded by PLIP- 13 x HTO: HEPTANE-1,2,3-TRIOL(Non-covalent)
HTO.26: 7 residues within 4Å:- Chain A: N.84, R.135, P.346, E.347, P.350, I.351, K.352
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:K.352
- Hydrogen bonds: A:N.84, A:R.135, A:R.135
HTO.27: 6 residues within 4Å:- Chain A: A.64, V.65, R.92, Q.343, D.344, P.346
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:V.65, A:D.344
- Water bridges: A:E.89, A:E.89, A:D.344
HTO.28: 8 residues within 4Å:- Chain A: T.47, A.50, K.51, R.54, Y.164, N.175
- Ligands: SO4.8, GOL.114
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:T.47, A:A.50, A:K.51
- Hydrogen bonds: A:R.54, A:N.175
- Water bridges: A:Q.330
HTO.29: 5 residues within 4Å:- Chain A: P.24, P.25, H.44, A.46
- Ligands: GOL.45
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.24
- Hydrogen bonds: A:H.44
- Water bridges: A:A.46
HTO.68: 5 residues within 4Å:- Chain B: Q.225, S.226, R.227, D.228, Q.229
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:D.228, B:Q.229
- Hydrogen bonds: B:R.227
HTO.69: 6 residues within 4Å:- Chain B: T.26, L.30, Y.31, R.34
- Ligands: LDA.54, SO4.58
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:T.26
- Hydrogen bonds: B:R.34
- Water bridges: B:L.30
HTO.70: 6 residues within 4Å:- Chain B: A.5, L.6, A.7
- Ligands: LDA.51, GOL.76, GOL.84
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.7
HTO.104: 5 residues within 4Å:- Chain C: G.114, W.115, H.116
- Chain D: A.1
- Ligands: SO4.133
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:W.115
- Water bridges: C:I.113
HTO.105: 8 residues within 4Å:- Chain C: A.77, A.78, L.80, G.84, Q.87, A.88
- Ligands: LDA.97, HTO.106
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:Q.87
- Hydrogen bonds: C:A.78
HTO.106: 4 residues within 4Å:- Chain C: A.77, P.79, L.80
- Ligands: HTO.105
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:L.80
- Water bridges: C:L.81
HTO.107: 2 residues within 4Å:- Chain C: F.33, V.36
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.33, C:V.36
HTO.108: 2 residues within 4Å:- Chain C: K.72, Y.73
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:Y.73
- Water bridges: C:K.72
HTO.140: 8 residues within 4Å:- Chain B: W.17, W.21
- Chain C: I.150
- Chain D: P.198, G.201, F.202
- Ligands: LDA.50, BCB.89
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:P.198, D:G.201
- Hydrophobic interactions: C:I.150
- 54 x GOL: GLYCEROL(Non-functional Binders)
GOL.30: 8 residues within 4Å:- Chain A: V.42, D.258, T.262, N.263
- Chain C: L.165, T.256, R.257, G.258
Ligand excluded by PLIPGOL.31: 7 residues within 4Å:- Chain A: T.32, E.41, F.266, Q.283, K.334
- Ligands: HEC.4, GOL.44
Ligand excluded by PLIPGOL.32: 6 residues within 4Å:- Chain A: E.187, T.188, R.189, S.190
- Chain D: H.78, D.80
Ligand excluded by PLIPGOL.33: 8 residues within 4Å:- Chain A: E.41, K.51, L.260, G.261, G.331, V.332, T.333
- Ligands: GOL.38
Ligand excluded by PLIPGOL.34: 3 residues within 4Å:- Chain A: T.275, W.276, G.277
Ligand excluded by PLIPGOL.35: 6 residues within 4Å:- Chain A: R.236, G.237, K.238, E.239
- Ligands: LDA.5, LDA.129
Ligand excluded by PLIPGOL.36: 3 residues within 4Å:- Chain A: L.168, Q.317
- Ligands: SO4.13
Ligand excluded by PLIPGOL.37: 6 residues within 4Å:- Chain A: N.140, W.141, Q.143, W.289
- Ligands: SO4.24, GOL.145
Ligand excluded by PLIPGOL.38: 5 residues within 4Å:- Chain A: T.30, E.41, L.43
- Ligands: GOL.33, GOL.44
Ligand excluded by PLIPGOL.39: 5 residues within 4Å:- Chain A: P.180, T.181, H.182, R.185
- Ligands: SO4.10
Ligand excluded by PLIPGOL.40: 5 residues within 4Å:- Chain A: Y.207, M.212, S.244, D.245
- Chain D: K.97
Ligand excluded by PLIPGOL.41: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPGOL.42: 5 residues within 4Å:- Chain A: T.181, E.184, K.198
- Chain C: D.268, S.273
Ligand excluded by PLIPGOL.43: 5 residues within 4Å:- Chain A: R.129, A.136, Y.301
- Ligands: SO4.11, SO4.25
Ligand excluded by PLIPGOL.44: 3 residues within 4Å:- Chain A: K.334
- Ligands: GOL.31, GOL.38
Ligand excluded by PLIPGOL.45: 3 residues within 4Å:- Chain A: P.24, P.25
- Ligands: HTO.29
Ligand excluded by PLIPGOL.46: 2 residues within 4Å:- Chain A: P.180, R.185
Ligand excluded by PLIPGOL.47: 3 residues within 4Å:- Chain A: L.62, P.63
- Ligands: SO4.19
Ligand excluded by PLIPGOL.48: 3 residues within 4Å:- Chain A: P.310, A.311, S.312
Ligand excluded by PLIPGOL.49: 1 residues within 4Å:- Chain A: N.114
Ligand excluded by PLIPGOL.71: 5 residues within 4Å:- Chain B: L.137, A.140, T.141, F.143, R.153
Ligand excluded by PLIPGOL.72: 7 residues within 4Å:- Chain B: Y.31, E.35, R.38, K.66
- Chain C: N.199
- Chain D: R.265
- Ligands: SO4.131
Ligand excluded by PLIPGOL.73: 3 residues within 4Å:- Chain B: V.124, D.125, A.126
Ligand excluded by PLIPGOL.74: 2 residues within 4Å:- Chain B: T.250, R.253
Ligand excluded by PLIPGOL.75: 4 residues within 4Å:- Chain B: D.149, V.150, D.151, K.205
Ligand excluded by PLIPGOL.76: 7 residues within 4Å:- Chain B: H.3, G.4, A.5
- Chain D: F.288
- Ligands: LDA.5, HTO.70, LDA.130
Ligand excluded by PLIPGOL.77: 2 residues within 4Å:- Chain B: E.147
- Chain D: Y.36
Ligand excluded by PLIPGOL.78: 2 residues within 4Å:- Chain B: R.80, R.82
Ligand excluded by PLIPGOL.79: 4 residues within 4Å:- Chain B: N.220, V.221, P.222, R.223
Ligand excluded by PLIPGOL.80: 5 residues within 4Å:- Chain B: L.90, A.91, Q.92
- Chain C: R.7
- Ligands: GOL.85
Ligand excluded by PLIPGOL.81: 4 residues within 4Å:- Chain B: P.71, H.72
- Chain C: K.205
- Ligands: SO4.103
Ligand excluded by PLIPGOL.82: 4 residues within 4Å:- Chain B: K.204, K.205
- Ligands: SO4.60, SO4.67
Ligand excluded by PLIPGOL.83: 3 residues within 4Å:- Chain B: K.204, K.207, V.209
Ligand excluded by PLIPGOL.84: 4 residues within 4Å:- Chain B: A.7, Q.8, H.9
- Ligands: HTO.70
Ligand excluded by PLIPGOL.85: 6 residues within 4Å:- Chain B: E.87, L.88, K.89, L.90, T.104
- Ligands: GOL.80
Ligand excluded by PLIPGOL.86: 6 residues within 4Å:- Chain B: E.97, G.98, A.99
- Chain C: L.2, R.7, R.10
Ligand excluded by PLIPGOL.87: 2 residues within 4Å:- Chain B: T.141, D.142
Ligand excluded by PLIPGOL.109: 9 residues within 4Å:- Chain B: E.177, Y.179
- Chain C: I.224, G.225, A.226, L.227, S.228
- Chain D: G.42, D.43
Ligand excluded by PLIPGOL.110: 7 residues within 4Å:- Chain A: R.35
- Chain C: A.52, Q.55, G.56, S.65, L.81
- Ligands: GOL.142
Ligand excluded by PLIPGOL.111: 4 residues within 4Å:- Chain C: D.204, K.205, K.207
- Chain D: G.139
Ligand excluded by PLIPGOL.112: 5 residues within 4Å:- Chain C: P.57, T.58, W.59, D.60
- Ligands: GOL.115
Ligand excluded by PLIPGOL.113: 8 residues within 4Å:- Chain C: K.72, Y.73, G.74, L.75, G.76
- Ligands: LDA.98, LDA.99, GOL.116
Ligand excluded by PLIPGOL.114: 2 residues within 4Å:- Chain C: R.257
- Ligands: HTO.28
Ligand excluded by PLIPGOL.115: 5 residues within 4Å:- Chain C: W.59, D.60, P.61
- Ligands: LDA.95, GOL.112
Ligand excluded by PLIPGOL.116: 7 residues within 4Å:- Chain C: L.71, K.72, G.74, G.140, S.141
- Ligands: LDA.99, GOL.113
Ligand excluded by PLIPGOL.141: 7 residues within 4Å:- Chain A: T.227, A.228, L.229
- Chain B: Y.2
- Chain D: K.298
- Ligands: SO4.9, SO4.66
Ligand excluded by PLIPGOL.142: 6 residues within 4Å:- Chain A: F.34
- Chain C: S.65
- Chain D: D.304, Y.305, P.306
- Ligands: GOL.110
Ligand excluded by PLIPGOL.143: 5 residues within 4Å:- Chain D: W.23, G.24, D.25, N.26, D.27
Ligand excluded by PLIPGOL.144: 4 residues within 4Å:- Chain D: D.27, G.52, A.53, I.56
Ligand excluded by PLIPGOL.145: 6 residues within 4Å:- Chain A: Q.143, W.289
- Chain D: P.319, G.320, A.321
- Ligands: GOL.37
Ligand excluded by PLIPGOL.146: 4 residues within 4Å:- Chain D: D.25, N.26, D.27, R.28
Ligand excluded by PLIPGOL.147: 3 residues within 4Å:- Chain D: P.15, H.16, Y.34
Ligand excluded by PLIPGOL.148: 4 residues within 4Å:- Chain D: L.107, W.112
- Ligands: LDA.127, LDA.128
Ligand excluded by PLIPGOL.149: 3 residues within 4Å:- Chain D: G.30, K.31
- Ligands: BCB.119
Ligand excluded by PLIP- 4 x BCB: BACTERIOCHLOROPHYLL B(Non-covalent)
BCB.88: 32 residues within 4Å:- Chain C: F.97, P.124, I.125, M.127, F.128, L.131, V.157, N.158, F.160, G.161, Y.162, W.167, H.168, G.172, H.173, S.176, V.177, L.180, F.181, I.240, F.241, G.244, G.247, T.248
- Chain D: L.184, Y.195, Y.208
- Ligands: BCB.89, BPB.90, MQ9.118, BCB.119, BCB.120
18 PLIP interactions:18 interactions with chain C,- Hydrophobic interactions: C:F.97, C:F.97, C:P.124, C:L.131, C:F.160, C:Y.162, C:W.167, C:W.167, C:V.177, C:L.180, C:F.181, C:I.240, C:F.241, C:F.241
- Hydrogen bonds: C:S.176, C:T.248
- pi-Stacking: C:W.167
- Metal complexes: C:H.173
BCB.89: 23 residues within 4Å:- Chain C: I.49, F.128, F.146, I.150, L.151, H.153, L.154, V.157
- Chain D: Y.195, G.201, I.204, G.205, Y.208, G.209, L.212
- Ligands: LDA.50, BCB.88, BPB.90, LDA.94, LDA.95, MQ9.118, BCB.120, HTO.140
10 PLIP interactions:4 interactions with chain D, 6 interactions with chain C,- Hydrophobic interactions: D:Y.195, D:I.204, D:I.204, C:I.49, C:F.128, C:F.146, C:L.154, C:V.157
- pi-Stacking: D:Y.208
- Metal complexes: C:H.153
BCB.119: 27 residues within 4Å:- Chain C: H.168, M.174, V.177, S.178, F.181, V.182, M.185, V.220, G.221, Y.222
- Chain D: M.120, F.154, V.155, I.158, V.173, I.177, W.178, H.180, I.181, L.184
- Ligands: DGA.7, BCB.88, UQ9.91, BCB.120, BPB.121, NS5.122, GOL.149
12 PLIP interactions:7 interactions with chain D, 5 interactions with chain C,- Hydrophobic interactions: D:F.154, D:I.158, D:V.173, D:I.177, D:I.181, D:L.184, C:V.177, C:F.181, C:V.182, C:Y.222
- Metal complexes: D:H.180
- pi-Stacking: C:F.181
BCB.120: 33 residues within 4Å:- Chain C: V.157, Y.162, F.181
- Chain D: G.62, I.66, I.69, M.120, L.124, F.148, A.151, F.154, V.155, I.158, W.183, L.184, T.185, F.187, S.188, F.194, Y.195, H.200, S.203, I.204, A.207, Y.208, V.274, M.275, A.278, I.282
- Ligands: BCB.88, BCB.89, BCB.119, BPB.121
21 PLIP interactions:21 interactions with chain D,- Hydrophobic interactions: D:I.66, D:I.69, D:L.124, D:F.148, D:A.151, D:F.154, D:F.154, D:V.155, D:W.183, D:L.184, D:F.187, D:F.194, D:Y.195, D:Y.195, D:I.204, D:A.207, D:Y.208
- Hydrogen bonds: D:Y.195, D:S.203
- Salt bridges: D:H.200
- Metal complexes: D:H.200
- 2 x BPB: BACTERIOPHEOPHYTIN B(Non-covalent)
BPB.90: 28 residues within 4Å:- Chain C: F.41, I.42, G.45, I.49, A.93, A.96, F.97, W.100, E.104, V.117, A.120, F.121, P.124, F.128, Y.148, G.149, I.150, H.153, A.237, F.241
- Chain D: Y.208, G.211, L.212, W.250, I.254
- Ligands: BCB.88, BCB.89, MQ9.118
13 PLIP interactions:1 interactions with chain D, 12 interactions with chain C- Hydrophobic interactions: D:Y.208, C:I.42, C:I.49, C:A.96, C:A.120, C:F.121, C:F.121, C:F.121, C:F.128, C:Y.148, C:Y.148, C:F.241
- Hydrogen bonds: C:E.104
BPB.121: 24 residues within 4Å:- Chain C: F.181, A.184, M.185, L.189, V.219, V.220
- Chain D: A.58, F.59, A.63, I.66, L.67, S.123, L.124, W.127, V.131, I.144, N.147, F.148, A.151, S.271, M.275
- Ligands: UQ9.91, BCB.119, BCB.120
14 PLIP interactions:11 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:F.59, D:F.59, D:F.59, D:A.63, D:I.66, D:L.67, D:W.127, D:N.147, D:F.148, D:F.148, C:A.184, C:M.185, C:L.189
- pi-Stacking: D:F.148
- 2 x UQ9: Ubiquinone-9(Non-covalent)
UQ9.91: 22 residues within 4Å:- Chain C: S.178, V.182, L.189, H.190, L.193, I.194, E.212, N.213, F.216, V.220, Y.222, S.223, I.224, G.225, A.226, I.229, L.232
- Chain D: I.49, F.59, W.127
- Ligands: BCB.119, BPB.121
14 PLIP interactions:11 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:V.182, C:L.189, C:L.193, C:F.216, C:F.216, C:V.220, C:Y.222, C:I.229, C:L.232, D:I.49, D:F.59, D:W.127
- Hydrogen bonds: C:I.224, C:G.225
UQ9.92: 6 residues within 4Å:- Chain C: W.263, W.266
- Chain D: F.85, F.88, F.89
- Ligands: DGA.7
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:W.263, C:W.266, D:F.89, D:F.89, D:F.89
- pi-Stacking: C:W.266
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x MQ9: MENAQUINONE-9(Non-covalent)
MQ9.118: 30 residues within 4Å:- Chain C: Y.29, F.30, G.35, I.39, I.42, F.43, W.100, R.103
- Chain D: L.212, A.216, H.217, T.220, A.246, A.247, W.250, I.254, F.256, N.257, A.258, T.259, I.260, V.263, W.266, F.270
- Ligands: BCB.88, BCB.89, BPB.90, LDA.93, LDA.94, SO4.102
21 PLIP interactions:9 interactions with chain C, 12 interactions with chain D- Hydrophobic interactions: C:Y.29, C:Y.29, C:Y.29, C:I.39, C:I.42, C:F.43, C:W.100, C:W.100, C:W.100, D:L.212, D:A.246, D:W.250, D:I.254, D:F.256, D:F.256, D:I.260, D:V.263, D:W.266, D:W.266, D:F.270
- Hydrogen bonds: D:A.258
- 1 x NS5: 15-cis-1,2-dihydroneurosporene(Non-covalent)
NS5.122: 25 residues within 4Å:- Chain D: I.66, L.67, I.69, G.70, F.71, M.73, L.74, F.88, I.104, W.113, L.114, G.117, L.118, M.120, T.121, V.155, G.159, C.160, V.173, P.174, F.175, G.176, I.177, H.180
- Ligands: BCB.119
15 PLIP interactions:15 interactions with chain D- Hydrophobic interactions: D:L.67, D:I.69, D:L.74, D:F.88, D:I.104, D:W.113, D:L.114, D:L.118, D:V.173, D:V.173, D:F.175, D:F.175, D:F.175, D:I.177, D:H.180
- 1 x HTH: (2S,3R)-heptane-1,2,3-triol(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roszak, A.W. et al., New insights into the structure of the reaction centre from Blastochloris viridis: evolution in the laboratory. Biochem.J. (2012)
- Release Date
- 2011-11-23
- Peptides
- Photosynthetic reaction center cytochrome c subunit: A
Photosynthetic reaction center H-subunit: B
Photosynthetic reaction center L-subunit: C
Photosynthetic reaction center M-subunit: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
HC
LD
M - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 4 x HEC: HEME C(Covalent)
- 24 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
- 1 x DGA: DIACYL GLYCEROL(Covalent)
- 41 x SO4: SULFATE ION(Non-functional Binders)
- 13 x HTO: HEPTANE-1,2,3-TRIOL(Non-covalent)
- 54 x GOL: GLYCEROL(Non-functional Binders)
- 4 x BCB: BACTERIOCHLOROPHYLL B(Non-covalent)
- 2 x BPB: BACTERIOPHEOPHYTIN B(Non-covalent)
- 2 x UQ9: Ubiquinone-9(Non-covalent)
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x MQ9: MENAQUINONE-9(Non-covalent)
- 1 x NS5: 15-cis-1,2-dihydroneurosporene(Non-covalent)
- 1 x HTH: (2S,3R)-heptane-1,2,3-triol(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roszak, A.W. et al., New insights into the structure of the reaction centre from Blastochloris viridis: evolution in the laboratory. Biochem.J. (2012)
- Release Date
- 2011-11-23
- Peptides
- Photosynthetic reaction center cytochrome c subunit: A
Photosynthetic reaction center H-subunit: B
Photosynthetic reaction center L-subunit: C
Photosynthetic reaction center M-subunit: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
HC
LD
M - Membrane
-
We predict this structure to be a membrane protein.