- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 4 x HEC: HEME C(Covalent)
- 4 x BCB: BACTERIOCHLOROPHYLL B(Non-covalent)(Covalent)
BCB.5: 28 residues within 4Å:- Chain B: F.97, F.121, P.124, I.125, M.127, F.128, V.157, F.160, G.161, Y.162, W.167, H.168, H.173, S.176, V.177, L.180, F.181, I.240, F.241, G.244, T.248
- Chain C: Y.195, Y.208
- Ligands: BCB.6, BPB.7, BCB.14, BCB.15, MQ7.17
22 PLIP interactions:22 interactions with chain B,- Hydrophobic interactions: B:F.97, B:F.97, B:F.121, B:P.124, B:V.157, B:F.160, B:Y.162, B:W.167, B:W.167, B:V.177, B:L.180, B:F.181, B:I.240, B:F.241, B:F.241, B:F.241
- Hydrogen bonds: B:S.176, B:T.248
- pi-Stacking: B:W.167, B:H.168
- pi-Cation interactions: B:H.173
- Metal complexes: B:H.173
BCB.6: 19 residues within 4Å:- Chain B: I.49, F.128, F.146, I.150, H.153, L.154, V.157
- Chain C: Y.195, G.201, I.204, G.205, Y.208, G.209, L.212
- Ligands: BCB.5, BPB.7, BCB.15, MQ7.17, LDA.23
11 PLIP interactions:6 interactions with chain B, 5 interactions with chain C,- Hydrophobic interactions: B:I.49, B:F.128, B:F.146, B:L.154, B:V.157, C:Y.195, C:I.204, C:I.204, C:L.212
- Metal complexes: B:H.153
- pi-Stacking: C:Y.208
BCB.14: 21 residues within 4Å:- Chain B: H.168, M.174, V.177, S.178, F.181, V.182, M.185, V.220
- Chain C: I.49, M.120, F.154, V.155, I.177, W.178, H.180, I.181, L.184
- Ligands: BCB.5, BCB.15, BPB.16, NS1.18
12 PLIP interactions:8 interactions with chain C, 4 interactions with chain B,- Hydrophobic interactions: C:I.49, C:F.154, C:V.155, C:I.177, C:I.181, C:L.184, C:L.184, B:V.177, B:F.181, B:V.182
- Metal complexes: C:H.180
- pi-Stacking: B:F.181
BCB.15: 28 residues within 4Å:- Chain B: Y.162, F.181
- Chain C: I.69, M.120, L.124, F.148, A.151, F.154, V.155, W.183, L.184, T.185, F.187, S.188, F.194, Y.195, H.200, S.203, I.204, A.207, Y.208, M.275, A.278, I.282
- Ligands: BCB.5, BCB.6, BCB.14, BPB.16
24 PLIP interactions:1 interactions with chain B, 23 interactions with chain C,- pi-Cation interactions: B:H.168
- Hydrophobic interactions: C:I.69, C:L.124, C:F.148, C:A.151, C:F.154, C:F.154, C:F.154, C:V.155, C:W.183, C:L.184, C:F.187, C:F.194, C:Y.195, C:Y.195, C:I.204, C:I.204, C:A.207, C:Y.208
- Hydrogen bonds: C:Y.195, C:S.203
- Salt bridges: C:H.200
- pi-Stacking: C:Y.195
- Metal complexes: C:H.200
- 2 x BPB: BACTERIOPHEOPHYTIN B(Non-covalent)
BPB.7: 25 residues within 4Å:- Chain B: I.49, A.93, A.96, F.97, W.100, E.104, V.117, A.120, F.121, V.123, P.124, Y.148, G.149, H.153, A.237, S.238, F.241
- Chain C: Y.208, G.211, L.212, A.216, W.250, I.254
- Ligands: BCB.5, BCB.6
12 PLIP interactions:11 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:I.49, B:A.96, B:A.120, B:F.121, B:F.121, B:V.123, B:P.124, B:Y.148, B:Y.148, B:F.241, C:Y.208
- Hydrogen bonds: B:E.104
BPB.16: 20 residues within 4Å:- Chain B: F.181, M.185, L.189, V.220
- Chain C: F.59, G.62, S.63, I.66, S.123, L.124, W.127, V.131, I.144, N.147, F.148, S.271, M.275
- Ligands: BCB.14, BCB.15, NS1.18
9 PLIP interactions:2 interactions with chain B, 7 interactions with chain C- Hydrophobic interactions: B:F.181, B:L.189, C:F.59, C:I.66, C:N.147, C:F.148, C:F.148, C:F.148, C:F.148
- 1 x UQ1: UBIQUINONE-1(Non-covalent)
- 1 x FE: FE (III) ION(Non-covalent)
- 7 x SO4: SULFATE ION(Non-functional Binders)
SO4.10: 3 residues within 4Å:- Chain B: N.199
- Chain C: H.143, R.265
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Salt bridges: C:H.143, C:R.265
- Water bridges: D:K.66
SO4.11: 4 residues within 4Å:- Chain C: A.1, R.226
- Chain D: T.211, L.246
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:A.1, C:A.1
- Water bridges: C:D.2, C:R.226
- Salt bridges: C:R.226
SO4.12: 7 residues within 4Å:- Chain C: W.23, Y.50, L.51, G.52, A.53, S.54, S.133
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:Y.50, C:A.53, C:S.54, C:S.54, C:S.133
- Water bridges: C:Y.50, C:G.55
SO4.13: 3 residues within 4Å:- Chain C: S.35, Y.36, W.37
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Y.36, C:W.37
SO4.20: 4 residues within 4Å:- Chain C: R.251
- Chain D: R.33, R.37, Y.41
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:R.33, D:Y.41
- Water bridges: D:Y.41
- Salt bridges: D:R.37, C:R.251
SO4.21: 3 residues within 4Å:- Chain D: Y.117, R.233, K.237
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Y.117
- Salt bridges: D:R.233, D:K.237
SO4.22: 1 residues within 4Å:- Chain D: R.34
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:R.34
- 1 x MQ7: MENAQUINONE-7(Non-covalent)
MQ7.17: 20 residues within 4Å:- Chain B: V.26, Y.29, V.31, W.100, R.103
- Chain C: A.216, H.217, T.220, W.250, I.254, F.256, N.257, A.258, T.259, I.260, V.263, W.266, F.270
- Ligands: BCB.5, BCB.6
19 PLIP interactions:13 interactions with chain C, 6 interactions with chain B- Hydrophobic interactions: C:A.216, C:T.220, C:W.250, C:W.250, C:F.256, C:F.256, C:I.260, C:V.263, C:W.266, C:W.266, C:F.270, B:Y.29, B:Y.29, B:Y.29, B:V.31, B:W.100, B:W.100
- Hydrogen bonds: C:H.217, C:A.258
- 1 x NS1: 15-trans-1,2-dihydroneurosporene(Non-covalent)
NS1.18: 18 residues within 4Å:- Chain C: I.66, L.70, M.73, F.88, G.117, L.118, T.121, V.155, G.159, C.160, V.173, P.174, F.175, G.176, I.177, H.180
- Ligands: BCB.14, BPB.16
12 PLIP interactions:12 interactions with chain C- Hydrophobic interactions: C:I.66, C:I.66, C:L.70, C:L.70, C:F.88, C:L.118, C:V.155, C:V.173, C:V.173, C:F.175, C:I.177, C:H.180
- 2 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.19: 5 residues within 4Å:- Chain C: F.202, G.205, F.206, F.256
- Chain D: R.33
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:F.206, C:F.256
- pi-Cation interactions: C:F.256
- Hydrogen bonds: D:R.33
LDA.23: 11 residues within 4Å:- Chain B: L.151
- Chain C: Y.195, C.197, P.198, G.201, W.295, H.299
- Chain D: Q.14, W.17, Y.18
- Ligands: BCB.6
6 PLIP interactions:1 interactions with chain B, 3 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: B:L.151, C:P.198, C:P.198, C:W.295, D:W.17, D:W.17
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Deisenhofer, J. et al., Crystallographic refinement at 2.3 A resolution and refined model of the photosynthetic reaction centre from Rhodopseudomonas viridis. J.Mol.Biol. (1995)
- Release Date
- 1989-01-09
- Peptides
- PHOTOSYNTHETIC REACTION CENTER: A
PHOTOSYNTHETIC REACTION CENTER: B
PHOTOSYNTHETIC REACTION CENTER: C
PHOTOSYNTHETIC REACTION CENTER: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
LC
MD
H - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 4 x HEC: HEME C(Covalent)
- 4 x BCB: BACTERIOCHLOROPHYLL B(Non-covalent)(Covalent)
- 2 x BPB: BACTERIOPHEOPHYTIN B(Non-covalent)
- 1 x UQ1: UBIQUINONE-1(Non-covalent)
- 1 x FE: FE (III) ION(Non-covalent)
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 1 x MQ7: MENAQUINONE-7(Non-covalent)
- 1 x NS1: 15-trans-1,2-dihydroneurosporene(Non-covalent)
- 2 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Deisenhofer, J. et al., Crystallographic refinement at 2.3 A resolution and refined model of the photosynthetic reaction centre from Rhodopseudomonas viridis. J.Mol.Biol. (1995)
- Release Date
- 1989-01-09
- Peptides
- PHOTOSYNTHETIC REACTION CENTER: A
PHOTOSYNTHETIC REACTION CENTER: B
PHOTOSYNTHETIC REACTION CENTER: C
PHOTOSYNTHETIC REACTION CENTER: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
LC
MD
H - Membrane
-
We predict this structure to be a membrane protein.