- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.86 Å
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 8 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 8 x BCB: BACTERIOCHLOROPHYLL B(Non-covalent)
BCB.5: 30 residues within 4Å:- Chain B: F.97, P.124, I.125, M.127, F.128, L.131, V.157, N.158, F.160, G.161, Y.162, W.167, H.168, H.173, S.176, V.177, L.180, F.181, I.240, F.241, G.244, T.248
- Chain C: L.184, Y.195, Y.208
- Ligands: BCB.6, BPB.7, BCB.14, BCB.15, MQ7.17
17 PLIP interactions:17 interactions with chain B,- Hydrophobic interactions: B:F.97, B:P.124, B:V.157, B:F.160, B:Y.162, B:W.167, B:W.167, B:V.177, B:L.180, B:F.181, B:I.240, B:F.241, B:F.241, B:F.241
- Hydrogen bonds: B:S.176
- pi-Stacking: B:W.167
- Metal complexes: B:H.173
BCB.6: 22 residues within 4Å:- Chain B: V.46, I.49, F.128, L.131, F.146, I.150, H.153, L.154, W.156, V.157
- Chain C: Y.195, G.201, I.204, G.205, Y.208, G.209
- Ligands: BCB.5, BPB.7, LDA.9, BCB.15, MQ7.17, LDA.19
15 PLIP interactions:10 interactions with chain B, 5 interactions with chain C,- Hydrophobic interactions: B:V.46, B:I.49, B:F.128, B:L.131, B:F.146, B:F.146, B:L.154, B:W.156, B:V.157, C:Y.195, C:I.204, C:I.204, C:Y.208
- Metal complexes: B:H.153
- pi-Stacking: C:Y.208
BCB.14: 23 residues within 4Å:- Chain B: H.168, M.174, V.177, S.178, F.181, V.182, M.185
- Chain C: M.120, F.154, V.155, I.158, V.173, I.177, W.178, H.180, I.181, W.183, L.184
- Ligands: BCB.5, UQ2.8, BCB.15, BPB.16, NS5.18
14 PLIP interactions:9 interactions with chain C, 5 interactions with chain B,- Hydrophobic interactions: C:F.154, C:V.155, C:I.158, C:V.173, C:I.177, C:I.181, C:W.183, C:L.184, B:V.177, B:F.181, B:V.182, B:V.182
- Metal complexes: C:H.180
- pi-Stacking: B:F.181
BCB.15: 35 residues within 4Å:- Chain B: V.157, Y.162, F.181
- Chain C: G.62, A.65, I.66, I.69, M.120, L.124, F.148, A.151, F.154, V.155, I.158, W.183, L.184, T.185, F.187, S.188, F.194, Y.195, H.200, S.203, I.204, A.207, Y.208, V.274, M.275, A.278, G.281, I.282
- Ligands: BCB.5, BCB.6, BCB.14, BPB.16
22 PLIP interactions:22 interactions with chain C,- Hydrophobic interactions: C:A.65, C:I.69, C:F.148, C:A.151, C:F.154, C:F.154, C:V.155, C:W.183, C:L.184, C:F.187, C:F.194, C:Y.195, C:Y.195, C:I.204, C:I.204, C:I.204, C:A.207, C:Y.208, C:V.274
- Hydrogen bonds: C:S.203
- Salt bridges: C:H.200
- Metal complexes: C:H.200
BCB.29: 30 residues within 4Å:- Chain F: F.97, P.124, I.125, M.127, F.128, L.131, V.157, N.158, F.160, G.161, Y.162, W.167, H.168, H.173, S.176, V.177, L.180, F.181, I.240, F.241, G.244, T.248
- Chain G: L.184, Y.195, Y.208
- Ligands: BCB.30, BPB.31, BCB.38, BCB.39, MQ7.41
18 PLIP interactions:18 interactions with chain F,- Hydrophobic interactions: F:F.97, F:P.124, F:V.157, F:F.160, F:Y.162, F:W.167, F:W.167, F:V.177, F:L.180, F:F.181, F:I.240, F:F.241, F:F.241, F:F.241
- Hydrogen bonds: F:S.176, F:T.248
- pi-Stacking: F:W.167
- Metal complexes: F:H.173
BCB.30: 22 residues within 4Å:- Chain F: V.46, I.49, F.128, L.131, F.146, I.150, H.153, L.154, W.156, V.157
- Chain G: Y.195, G.201, I.204, G.205, Y.208, G.209
- Ligands: BCB.29, BPB.31, LDA.33, BCB.39, MQ7.41, LDA.43
15 PLIP interactions:10 interactions with chain F, 5 interactions with chain G,- Hydrophobic interactions: F:V.46, F:I.49, F:F.128, F:L.131, F:F.146, F:F.146, F:L.154, F:W.156, F:V.157, G:Y.195, G:I.204, G:I.204, G:Y.208
- Metal complexes: F:H.153
- pi-Stacking: G:Y.208
BCB.38: 23 residues within 4Å:- Chain F: H.168, M.174, V.177, S.178, F.181, V.182, M.185
- Chain G: M.120, F.154, V.155, I.158, V.173, I.177, W.178, H.180, I.181, W.183, L.184
- Ligands: BCB.29, UQ2.32, BCB.39, BPB.40, NS5.42
14 PLIP interactions:9 interactions with chain G, 5 interactions with chain F,- Hydrophobic interactions: G:F.154, G:V.155, G:I.158, G:V.173, G:I.177, G:I.181, G:W.183, G:L.184, F:V.177, F:F.181, F:V.182, F:V.182
- Metal complexes: G:H.180
- pi-Stacking: F:F.181
BCB.39: 35 residues within 4Å:- Chain F: V.157, Y.162, F.181
- Chain G: G.62, A.65, I.66, I.69, M.120, L.124, F.148, A.151, F.154, V.155, I.158, W.183, L.184, T.185, F.187, S.188, F.194, Y.195, H.200, S.203, I.204, A.207, Y.208, V.274, M.275, A.278, G.281, I.282
- Ligands: BCB.29, BCB.30, BCB.38, BPB.40
23 PLIP interactions:23 interactions with chain G,- Hydrophobic interactions: G:A.65, G:I.69, G:F.148, G:A.151, G:F.154, G:F.154, G:V.155, G:W.183, G:L.184, G:F.187, G:F.194, G:Y.195, G:Y.195, G:I.204, G:I.204, G:I.204, G:A.207, G:Y.208, G:V.274
- Hydrogen bonds: G:Y.195, G:S.203
- Salt bridges: G:H.200
- Metal complexes: G:H.200
- 4 x BPB: BACTERIOPHEOPHYTIN B(Non-covalent)
BPB.7: 26 residues within 4Å:- Chain B: F.41, I.42, I.49, A.93, F.97, W.100, E.104, V.117, A.120, F.121, P.124, Y.148, G.149, H.153, A.237, S.238, F.241
- Chain C: Y.208, G.211, L.212, A.215, W.250, I.254
- Ligands: BCB.5, BCB.6, MQ7.17
18 PLIP interactions:16 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:I.42, B:I.42, B:I.49, B:A.93, B:A.120, B:F.121, B:F.121, B:F.121, B:F.121, B:P.124, B:Y.148, B:Y.148, B:Y.148, B:F.241, B:F.241, B:F.241, C:Y.208, C:L.212
BPB.16: 22 residues within 4Å:- Chain B: F.181, A.184, M.185, L.189, V.220
- Chain C: A.58, F.59, G.62, S.63, I.66, S.123, L.124, W.127, V.131, I.144, N.147, F.148, A.151, S.271, M.275
- Ligands: BCB.14, BCB.15
8 PLIP interactions:3 interactions with chain B, 5 interactions with chain C- Hydrophobic interactions: B:F.181, B:A.184, B:L.189, C:F.59, C:I.66, C:N.147, C:F.148, C:F.148
BPB.31: 26 residues within 4Å:- Chain F: F.41, I.42, I.49, A.93, F.97, W.100, E.104, V.117, A.120, F.121, P.124, Y.148, G.149, H.153, A.237, S.238, F.241
- Chain G: Y.208, G.211, L.212, A.215, W.250, I.254
- Ligands: BCB.29, BCB.30, MQ7.41
18 PLIP interactions:16 interactions with chain F, 2 interactions with chain G- Hydrophobic interactions: F:I.42, F:I.42, F:I.49, F:A.93, F:A.120, F:F.121, F:F.121, F:F.121, F:F.121, F:P.124, F:Y.148, F:Y.148, F:Y.148, F:F.241, F:F.241, F:F.241, G:Y.208, G:L.212
BPB.40: 22 residues within 4Å:- Chain F: F.181, A.184, M.185, L.189, V.220
- Chain G: A.58, F.59, G.62, S.63, I.66, S.123, L.124, W.127, V.131, I.144, N.147, F.148, A.151, S.271, M.275
- Ligands: BCB.38, BCB.39
8 PLIP interactions:5 interactions with chain G, 3 interactions with chain F- Hydrophobic interactions: G:F.59, G:I.66, G:N.147, G:F.148, G:F.148, F:F.181, F:A.184, F:L.189
- 2 x UQ2: UBIQUINONE-2(Non-covalent)
UQ2.8: 14 residues within 4Å:- Chain B: H.190, L.193, E.212, N.213, F.216, V.220, Y.222, S.223, I.224, G.225, A.226, I.229, L.232
- Ligands: BCB.14
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:F.216, B:F.216, B:F.216, B:V.220, B:I.224, B:I.224, B:I.229, B:I.229
- Hydrogen bonds: B:E.212, B:G.225
UQ2.32: 14 residues within 4Å:- Chain F: H.190, L.193, E.212, N.213, F.216, V.220, Y.222, S.223, I.224, G.225, A.226, I.229, L.232
- Ligands: BCB.38
9 PLIP interactions:9 interactions with chain F- Hydrophobic interactions: F:F.216, F:F.216, F:F.216, F:V.220, F:I.224, F:I.224, F:I.229, F:I.229
- Hydrogen bonds: F:G.225
- 12 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.9: 7 residues within 4Å:- Chain B: Y.29
- Chain C: I.254, G.255, F.256
- Chain H: A.53
- Ligands: BCB.6, LDA.19
3 PLIP interactions:2 interactions with chain H, 1 interactions with chain B- Hydrophobic interactions: H:A.53
- Salt bridges: H:E.55
- Hydrogen bonds: B:Y.29
LDA.19: 9 residues within 4Å:- Chain C: F.206, F.256, W.266
- Chain D: V.28, L.29, R.33
- Chain H: D.56
- Ligands: BCB.6, LDA.9
6 PLIP interactions:3 interactions with chain C, 2 interactions with chain H, 1 interactions with chain D- Hydrophobic interactions: C:F.206, C:W.266, D:V.28
- pi-Cation interactions: C:F.256
- Hydrogen bonds: H:D.56
- Salt bridges: H:D.56
LDA.20: 10 residues within 4Å:- Chain B: F.62, L.151
- Chain C: P.198, W.295, C.296, H.299, A.301
- Chain D: Q.14, W.17, Y.18
7 PLIP interactions:3 interactions with chain C, 2 interactions with chain D, 2 interactions with chain B- Hydrophobic interactions: C:W.295, C:H.299, C:A.301, D:W.17, B:F.62, B:L.151
- Hydrogen bonds: D:Q.14
LDA.21: 6 residues within 4Å:- Chain C: W.23, A.53, S.54, S.126, S.133
- Ligands: SO4.13
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:A.53
- Hydrogen bonds: C:W.23, C:S.133
LDA.22: 6 residues within 4Å:- Chain C: T.64, F.71, N.72, A.75, H.108, W.112
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:T.64, C:F.71, C:A.75
LDA.24: 9 residues within 4Å:- Chain D: R.34, V.59, Y.60, L.62, P.63, Y.64, P.65, R.80
- Chain H: L.30
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:V.59, D:Y.64, D:P.65
- pi-Cation interactions: D:Y.64
LDA.33: 7 residues within 4Å:- Chain D: A.53
- Chain F: Y.29
- Chain G: I.254, G.255, F.256
- Ligands: BCB.30, LDA.43
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:A.53
- Salt bridges: D:E.55
LDA.43: 9 residues within 4Å:
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.86 Å
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 8 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 8 x BCB: BACTERIOCHLOROPHYLL B(Non-covalent)
- 4 x BPB: BACTERIOPHEOPHYTIN B(Non-covalent)
- 2 x UQ2: UBIQUINONE-2(Non-covalent)
- 12 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)