- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.86 Å
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 8 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 8 x BCB: BACTERIOCHLOROPHYLL B(Non-covalent)
BCB.5: 30 residues within 4Å:- Chain B: F.97, P.124, I.125, M.127, F.128, L.131, V.157, N.158, F.160, G.161, Y.162, W.167, H.168, H.173, S.176, V.177, L.180, F.181, I.240, F.241, G.244, T.248
- Chain C: L.184, Y.195, Y.208
- Ligands: BCB.6, BPB.7, BCB.14, BCB.15, MQ7.17
17 PLIP interactions:17 interactions with chain B,- Hydrophobic interactions: B:F.97, B:P.124, B:V.157, B:F.160, B:Y.162, B:W.167, B:W.167, B:V.177, B:L.180, B:F.181, B:I.240, B:F.241, B:F.241, B:F.241
- Hydrogen bonds: B:S.176
- pi-Stacking: B:W.167
- Metal complexes: B:H.173
BCB.6: 22 residues within 4Å:- Chain B: V.46, I.49, F.128, L.131, F.146, I.150, H.153, L.154, W.156, V.157
- Chain C: Y.195, G.201, I.204, G.205, Y.208, G.209
- Ligands: BCB.5, BPB.7, LDA.9, BCB.15, MQ7.17, LDA.19
15 PLIP interactions:5 interactions with chain C, 10 interactions with chain B,- Hydrophobic interactions: C:Y.195, C:I.204, C:I.204, C:Y.208, B:V.46, B:I.49, B:F.128, B:L.131, B:F.146, B:F.146, B:L.154, B:W.156, B:V.157
- pi-Stacking: C:Y.208
- Metal complexes: B:H.153
BCB.14: 23 residues within 4Å:- Chain B: H.168, M.174, V.177, S.178, F.181, V.182, M.185
- Chain C: M.120, F.154, V.155, I.158, V.173, I.177, W.178, H.180, I.181, W.183, L.184
- Ligands: BCB.5, UQ2.8, BCB.15, BPB.16, NS5.18
14 PLIP interactions:5 interactions with chain B, 9 interactions with chain C,- Hydrophobic interactions: B:V.177, B:F.181, B:V.182, B:V.182, C:F.154, C:V.155, C:I.158, C:V.173, C:I.177, C:I.181, C:W.183, C:L.184
- pi-Stacking: B:F.181
- Metal complexes: C:H.180
BCB.15: 35 residues within 4Å:- Chain B: V.157, Y.162, F.181
- Chain C: G.62, A.65, I.66, I.69, M.120, L.124, F.148, A.151, F.154, V.155, I.158, W.183, L.184, T.185, F.187, S.188, F.194, Y.195, H.200, S.203, I.204, A.207, Y.208, V.274, M.275, A.278, G.281, I.282
- Ligands: BCB.5, BCB.6, BCB.14, BPB.16
22 PLIP interactions:22 interactions with chain C,- Hydrophobic interactions: C:A.65, C:I.69, C:F.148, C:A.151, C:F.154, C:F.154, C:V.155, C:W.183, C:L.184, C:F.187, C:F.194, C:Y.195, C:Y.195, C:I.204, C:I.204, C:I.204, C:A.207, C:Y.208, C:V.274
- Hydrogen bonds: C:S.203
- Salt bridges: C:H.200
- Metal complexes: C:H.200
BCB.29: 30 residues within 4Å:- Chain F: F.97, P.124, I.125, M.127, F.128, L.131, V.157, N.158, F.160, G.161, Y.162, W.167, H.168, H.173, S.176, V.177, L.180, F.181, I.240, F.241, G.244, T.248
- Chain G: L.184, Y.195, Y.208
- Ligands: BCB.30, BPB.31, BCB.38, BCB.39, MQ7.41
18 PLIP interactions:18 interactions with chain F,- Hydrophobic interactions: F:F.97, F:P.124, F:V.157, F:F.160, F:Y.162, F:W.167, F:W.167, F:V.177, F:L.180, F:F.181, F:I.240, F:F.241, F:F.241, F:F.241
- Hydrogen bonds: F:S.176, F:T.248
- pi-Stacking: F:W.167
- Metal complexes: F:H.173
BCB.30: 22 residues within 4Å:- Chain F: V.46, I.49, F.128, L.131, F.146, I.150, H.153, L.154, W.156, V.157
- Chain G: Y.195, G.201, I.204, G.205, Y.208, G.209
- Ligands: BCB.29, BPB.31, LDA.33, BCB.39, MQ7.41, LDA.43
15 PLIP interactions:10 interactions with chain F, 5 interactions with chain G,- Hydrophobic interactions: F:V.46, F:I.49, F:F.128, F:L.131, F:F.146, F:F.146, F:L.154, F:W.156, F:V.157, G:Y.195, G:I.204, G:I.204, G:Y.208
- Metal complexes: F:H.153
- pi-Stacking: G:Y.208
BCB.38: 23 residues within 4Å:- Chain F: H.168, M.174, V.177, S.178, F.181, V.182, M.185
- Chain G: M.120, F.154, V.155, I.158, V.173, I.177, W.178, H.180, I.181, W.183, L.184
- Ligands: BCB.29, UQ2.32, BCB.39, BPB.40, NS5.42
14 PLIP interactions:9 interactions with chain G, 5 interactions with chain F,- Hydrophobic interactions: G:F.154, G:V.155, G:I.158, G:V.173, G:I.177, G:I.181, G:W.183, G:L.184, F:V.177, F:F.181, F:V.182, F:V.182
- Metal complexes: G:H.180
- pi-Stacking: F:F.181
BCB.39: 35 residues within 4Å:- Chain F: V.157, Y.162, F.181
- Chain G: G.62, A.65, I.66, I.69, M.120, L.124, F.148, A.151, F.154, V.155, I.158, W.183, L.184, T.185, F.187, S.188, F.194, Y.195, H.200, S.203, I.204, A.207, Y.208, V.274, M.275, A.278, G.281, I.282
- Ligands: BCB.29, BCB.30, BCB.38, BPB.40
23 PLIP interactions:23 interactions with chain G,- Hydrophobic interactions: G:A.65, G:I.69, G:F.148, G:A.151, G:F.154, G:F.154, G:V.155, G:W.183, G:L.184, G:F.187, G:F.194, G:Y.195, G:Y.195, G:I.204, G:I.204, G:I.204, G:A.207, G:Y.208, G:V.274
- Hydrogen bonds: G:Y.195, G:S.203
- Salt bridges: G:H.200
- Metal complexes: G:H.200
- 4 x BPB: BACTERIOPHEOPHYTIN B(Non-covalent)
BPB.7: 26 residues within 4Å:- Chain B: F.41, I.42, I.49, A.93, F.97, W.100, E.104, V.117, A.120, F.121, P.124, Y.148, G.149, H.153, A.237, S.238, F.241
- Chain C: Y.208, G.211, L.212, A.215, W.250, I.254
- Ligands: BCB.5, BCB.6, MQ7.17
18 PLIP interactions:16 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:I.42, B:I.42, B:I.49, B:A.93, B:A.120, B:F.121, B:F.121, B:F.121, B:F.121, B:P.124, B:Y.148, B:Y.148, B:Y.148, B:F.241, B:F.241, B:F.241, C:Y.208, C:L.212
BPB.16: 22 residues within 4Å:- Chain B: F.181, A.184, M.185, L.189, V.220
- Chain C: A.58, F.59, G.62, S.63, I.66, S.123, L.124, W.127, V.131, I.144, N.147, F.148, A.151, S.271, M.275
- Ligands: BCB.14, BCB.15
8 PLIP interactions:3 interactions with chain B, 5 interactions with chain C- Hydrophobic interactions: B:F.181, B:A.184, B:L.189, C:F.59, C:I.66, C:N.147, C:F.148, C:F.148
BPB.31: 26 residues within 4Å:- Chain F: F.41, I.42, I.49, A.93, F.97, W.100, E.104, V.117, A.120, F.121, P.124, Y.148, G.149, H.153, A.237, S.238, F.241
- Chain G: Y.208, G.211, L.212, A.215, W.250, I.254
- Ligands: BCB.29, BCB.30, MQ7.41
18 PLIP interactions:16 interactions with chain F, 2 interactions with chain G- Hydrophobic interactions: F:I.42, F:I.42, F:I.49, F:A.93, F:A.120, F:F.121, F:F.121, F:F.121, F:F.121, F:P.124, F:Y.148, F:Y.148, F:Y.148, F:F.241, F:F.241, F:F.241, G:Y.208, G:L.212
BPB.40: 22 residues within 4Å:- Chain F: F.181, A.184, M.185, L.189, V.220
- Chain G: A.58, F.59, G.62, S.63, I.66, S.123, L.124, W.127, V.131, I.144, N.147, F.148, A.151, S.271, M.275
- Ligands: BCB.38, BCB.39
8 PLIP interactions:3 interactions with chain F, 5 interactions with chain G- Hydrophobic interactions: F:F.181, F:A.184, F:L.189, G:F.59, G:I.66, G:N.147, G:F.148, G:F.148
- 2 x UQ2: UBIQUINONE-2(Non-covalent)
UQ2.8: 14 residues within 4Å:- Chain B: H.190, L.193, E.212, N.213, F.216, V.220, Y.222, S.223, I.224, G.225, A.226, I.229, L.232
- Ligands: BCB.14
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:F.216, B:F.216, B:F.216, B:V.220, B:I.224, B:I.224, B:I.229, B:I.229
- Hydrogen bonds: B:E.212, B:G.225
UQ2.32: 14 residues within 4Å:- Chain F: H.190, L.193, E.212, N.213, F.216, V.220, Y.222, S.223, I.224, G.225, A.226, I.229, L.232
- Ligands: BCB.38
9 PLIP interactions:9 interactions with chain F- Hydrophobic interactions: F:F.216, F:F.216, F:F.216, F:V.220, F:I.224, F:I.224, F:I.229, F:I.229
- Hydrogen bonds: F:G.225
- 12 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.9: 7 residues within 4Å:- Chain B: Y.29
- Chain C: I.254, G.255, F.256
- Chain H: A.53
- Ligands: BCB.6, LDA.19
3 PLIP interactions:2 interactions with chain H, 1 interactions with chain B- Hydrophobic interactions: H:A.53
- Salt bridges: H:E.55
- Hydrogen bonds: B:Y.29
LDA.19: 9 residues within 4Å:- Chain C: F.206, F.256, W.266
- Chain D: V.28, L.29, R.33
- Chain H: D.56
- Ligands: BCB.6, LDA.9
6 PLIP interactions:1 interactions with chain D, 3 interactions with chain C, 2 interactions with chain H- Hydrophobic interactions: D:V.28, C:F.206, C:W.266
- pi-Cation interactions: C:F.256
- Hydrogen bonds: H:D.56
- Salt bridges: H:D.56
LDA.20: 10 residues within 4Å:- Chain B: F.62, L.151
- Chain C: P.198, W.295, C.296, H.299, A.301
- Chain D: Q.14, W.17, Y.18
7 PLIP interactions:2 interactions with chain D, 3 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: D:W.17, C:W.295, C:H.299, C:A.301, B:F.62, B:L.151
- Hydrogen bonds: D:Q.14
LDA.21: 6 residues within 4Å:- Chain C: W.23, A.53, S.54, S.126, S.133
- Ligands: SO4.13
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:A.53
- Hydrogen bonds: C:W.23, C:S.133
LDA.22: 6 residues within 4Å:- Chain C: T.64, F.71, N.72, A.75, H.108, W.112
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:T.64, C:F.71, C:A.75
LDA.24: 9 residues within 4Å:- Chain D: R.34, V.59, Y.60, L.62, P.63, Y.64, P.65, R.80
- Chain H: L.30
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:V.59, D:Y.64, D:P.65
- pi-Cation interactions: D:Y.64
LDA.33: 7 residues within 4Å:- Chain D: A.53
- Chain F: Y.29
- Chain G: I.254, G.255, F.256
- Ligands: BCB.30, LDA.43
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:A.53
- Salt bridges: D:E.55
LDA.43: 9 residues within 4Å:- Chain D: D.56
- Chain G: F.206, F.256, W.266
- Chain H: V.28, L.29, R.33
- Ligands: BCB.30, LDA.33
6 PLIP interactions:3 interactions with chain G, 2 interactions with chain D, 1 interactions with chain H- Hydrophobic interactions: G:F.206, G:W.266, H:V.28
- pi-Cation interactions: G:F.256
- Hydrogen bonds: D:D.56
- Salt bridges: D:D.56
LDA.44: 10 residues within 4Å:- Chain F: F.62, L.151
- Chain G: P.198, W.295, C.296, H.299, A.301
- Chain H: Q.14, W.17, Y.18
8 PLIP interactions:4 interactions with chain G, 2 interactions with chain H, 2 interactions with chain F- Hydrophobic interactions: G:W.295, G:H.299, G:A.301, H:W.17, F:F.62, F:L.151
- Hydrogen bonds: G:H.299, H:Q.14
LDA.45: 6 residues within 4Å:- Chain G: W.23, A.53, S.54, S.126, S.133
- Ligands: SO4.37
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:A.53
- Hydrogen bonds: G:W.23, G:S.133
LDA.46: 6 residues within 4Å:- Chain G: T.64, F.71, N.72, A.75, H.108, W.112
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:T.64, G:F.71, G:A.75
LDA.48: 9 residues within 4Å:- Chain D: L.30
- Chain H: R.34, V.59, Y.60, L.62, P.63, Y.64, P.65, R.80
4 PLIP interactions:4 interactions with chain H- Hydrophobic interactions: H:V.59, H:Y.64, H:P.65
- pi-Cation interactions: H:Y.64
- 2 x FE2: FE (II) ION(Non-covalent)
FE2.10: 5 residues within 4Å:- Chain B: H.190, H.230
- Chain C: H.217, E.232, H.264
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain C- Metal complexes: B:H.190, B:H.230, C:H.217, C:E.232, C:H.264
FE2.34: 5 residues within 4Å:- Chain F: H.190, H.230
- Chain G: H.217, E.232, H.264
5 PLIP interactions:2 interactions with chain F, 3 interactions with chain G- Metal complexes: F:H.190, F:H.230, G:H.217, G:E.232, G:H.264
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.11: 4 residues within 4Å:- Chain B: N.199
- Chain C: H.143, R.265
- Chain D: Y.31
4 PLIP interactions:2 interactions with chain C, 1 interactions with chain D, 1 interactions with chain B- Salt bridges: C:H.143, C:R.265
- Hydrogen bonds: D:Y.31, B:N.199
SO4.12: 5 residues within 4Å:- Chain C: A.1, D.2, R.226
- Chain D: T.211, L.246
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:A.1, C:D.2
- Salt bridges: C:R.226
SO4.13: 7 residues within 4Å:- Chain C: W.23, Y.50, G.52, A.53, S.54, S.133
- Ligands: LDA.21
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:Y.50, C:A.53, C:S.54, C:S.54, C:S.133
SO4.23: 5 residues within 4Å:- Chain C: R.251
- Chain D: R.33, R.37, Y.41, E.61
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:R.33, D:Y.41
- Salt bridges: D:R.37, C:R.251
SO4.35: 4 residues within 4Å:- Chain F: N.199
- Chain G: H.143, R.265
- Chain H: Y.31
4 PLIP interactions:2 interactions with chain G, 1 interactions with chain H, 1 interactions with chain F- Salt bridges: G:H.143, G:R.265
- Hydrogen bonds: H:Y.31, F:N.199
SO4.36: 5 residues within 4Å:- Chain G: A.1, D.2, R.226
- Chain H: T.211, L.246
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:A.1, G:D.2
- Salt bridges: G:R.226
SO4.37: 7 residues within 4Å:- Chain G: W.23, Y.50, G.52, A.53, S.54, S.133
- Ligands: LDA.45
4 PLIP interactions:4 interactions with chain G- Hydrogen bonds: G:A.53, G:S.54, G:S.54, G:S.133
SO4.47: 5 residues within 4Å:- Chain G: R.251
- Chain H: R.33, R.37, Y.41, E.61
3 PLIP interactions:1 interactions with chain G, 2 interactions with chain H- Salt bridges: G:R.251, H:R.37
- Hydrogen bonds: H:R.33
- 2 x MQ7: MENAQUINONE-7(Non-covalent)
MQ7.17: 25 residues within 4Å:- Chain B: V.26, Y.29, G.35, I.39, I.42, W.100
- Chain C: L.212, A.216, H.217, T.220, A.246, A.247, W.250, I.254, F.256, N.257, A.258, T.259, I.260, V.263, W.266, F.270
- Ligands: BCB.5, BCB.6, BPB.7
20 PLIP interactions:13 interactions with chain C, 7 interactions with chain B- Hydrophobic interactions: C:L.212, C:A.216, C:A.246, C:W.250, C:F.256, C:F.256, C:A.258, C:I.260, C:V.263, C:W.266, C:F.270, B:V.26, B:Y.29, B:I.39, B:I.42, B:W.100, B:W.100, B:W.100
- Hydrogen bonds: C:T.220, C:A.258
MQ7.41: 25 residues within 4Å:- Chain F: V.26, Y.29, G.35, I.39, I.42, W.100
- Chain G: L.212, A.216, H.217, T.220, A.246, A.247, W.250, I.254, F.256, N.257, A.258, T.259, I.260, V.263, W.266, F.270
- Ligands: BCB.29, BCB.30, BPB.31
19 PLIP interactions:12 interactions with chain G, 7 interactions with chain F- Hydrophobic interactions: G:L.212, G:A.216, G:A.246, G:W.250, G:F.256, G:F.256, G:A.258, G:I.260, G:V.263, G:W.266, G:F.270, F:V.26, F:Y.29, F:I.39, F:I.42, F:W.100, F:W.100, F:W.100
- Hydrogen bonds: G:A.258
- 2 x NS5: 15-cis-1,2-dihydroneurosporene(Non-covalent)
NS5.18: 14 residues within 4Å:- Chain C: I.69, L.114, G.117, L.118, M.120, T.121, V.155, G.159, C.160, V.173, F.175, G.176, H.180
- Ligands: BCB.14
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:I.69, C:L.114, C:L.118, C:V.173, C:V.173, C:F.175, C:F.175, C:F.175, C:H.180
NS5.42: 14 residues within 4Å:- Chain G: I.69, L.114, G.117, L.118, M.120, T.121, V.155, G.159, C.160, V.173, F.175, G.176, H.180
- Ligands: BCB.38
9 PLIP interactions:9 interactions with chain G- Hydrophobic interactions: G:I.69, G:L.114, G:L.118, G:V.173, G:V.173, G:F.175, G:F.175, G:F.175, G:H.180
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Baxter, R.H. et al., Time-resolved crystallographic studies of light-induced structural changes in the photosynthetic reaction center. Proc.Natl.Acad.Sci.USA (2004)
- Release Date
- 2004-04-27
- Peptides
- Photosynthetic reaction center cytochrome C subunit precursor: AE
Reaction center protein L chain: BF
Reaction center protein M chain: CG
Reaction center protein H chain: DH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CE
CB
LF
LC
MG
MD
HH
H - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.86 Å
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 8 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 8 x BCB: BACTERIOCHLOROPHYLL B(Non-covalent)
- 4 x BPB: BACTERIOPHEOPHYTIN B(Non-covalent)
- 2 x UQ2: UBIQUINONE-2(Non-covalent)
- 12 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
- 2 x FE2: FE (II) ION(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 2 x MQ7: MENAQUINONE-7(Non-covalent)
- 2 x NS5: 15-cis-1,2-dihydroneurosporene(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Baxter, R.H. et al., Time-resolved crystallographic studies of light-induced structural changes in the photosynthetic reaction center. Proc.Natl.Acad.Sci.USA (2004)
- Release Date
- 2004-04-27
- Peptides
- Photosynthetic reaction center cytochrome C subunit precursor: AE
Reaction center protein L chain: BF
Reaction center protein M chain: CG
Reaction center protein H chain: DH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CE
CB
LF
LC
MG
MD
HH
H - Membrane
-
We predict this structure to be a membrane protein.