SMTL ID : 3taj.1

Crystal structure of C-lobe of bovine lactoferrin complexed with Nabumetone at 1.7A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: G.131, L.132, N.135, E.323, A.327, N.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.330 Water bridges: A:T.326 NAG-NAG.2: 7 residues within 4Å: Chain A: L.93, N.204, D.205, W.208, E.209, E.214, Q.244 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.214 Hydrogen bonds: A:S.77 Water bridges: A:R.225

1 x NBO: nabumetone(Non-covalent)

NBO.3: 8 residues within 4Å: Chain A: T.89, G.91, P.252, N.253, E.318, Y.319, G.321, T.322 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.252, A:Y.319, A:Y.319, A:T.322 Hydrogen bonds: A:T.89, A:N.253

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 7 residues within 4Å: Chain A: T.2, Q.23, S.24, N.27, H.272, Q.273, L.276 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.276 Hydrogen bonds: A:T.2, A:N.27, A:Q.273

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 1 residues within 4Å: Chain A: E.318 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.318, A:E.318, H2O.6 ZN.6: 1 residues within 4Å: Chain A: H.247 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.247, H2O.9

1 x FE: FE (III) ION(Non-covalent)

FE.7: 5 residues within 4Å: Chain A: D.54, Y.92, Y.185, H.254 Ligands: CO3.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.54, A:Y.92, A:Y.185, A:H.254

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.8: 10 residues within 4Å: Chain A: D.54, Y.92, T.118, R.122, T.123, A.124, G.125, Y.185, H.254 Ligands: FE.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.118, A:R.122

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 3 residues within 4Å: Chain A: K.100, R.229, R.237 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.237 Salt bridges: A:R.229, A:R.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamini, S. et al., Crystal structure of C-lobe of bovine lactoferrin complexed with Nabumetone at 1.7A resolution. To be Published

Release Date

2011-08-31

Peptides

Lactotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactotransferrin

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