SMTL ID : 3tk5.1

Factor Xa in complex with D102-4380

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: Y.173, D.174, R.211, K.214 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.173, A:D.174, A:R.211, H2O.4, H2O.5 CA.2: 4 residues within 4Å: Chain A: D.56, N.58, Q.61, E.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66, H2O.1

1 x D1Q: 4-{3-[(4-chlorophenyl)amino]-3-oxopropyl}-3-({[5-(propan-2-yl)-4,5,6,7-tetrahydro[1,3]thiazolo[5,4-c]pyridin-2-yl]carbonyl}amino)benzoic acid(Non-covalent)

D1Q.3: 21 residues within 4Å: Chain A: K.82, E.83, T.84, Y.85, E.135, K.136, F.162, D.179, A.180, C.181, Q.182, V.203, W.205, G.206, E.207, G.208, C.209, R.211, G.216, I.217, Y.218 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.85, A:Y.85, A:E.135, A:A.180, A:V.203, A:W.205 Hydrogen bonds: A:E.135, A:G.208, A:G.208 Water bridges: A:G.206, A:G.206 Salt bridges: A:K.136, A:R.211 pi-Cation interactions: A:W.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mochizuki, A. et al., Zwitter ionic potent durable orally active Factor Xa inhibitor. To be Published

Release Date

2012-08-29

Peptides

Factor X heavy chain: A
Factor X light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Factor X heavy chain

Factor X light chain

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