SMTL ID : 3tk6.1

factor Xa in complex with D46-5241

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: Y.173, D.174, R.211, K.214 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.173, A:D.174, A:R.211, H2O.3, H2O.4 CA.2: 4 residues within 4Å: Chain A: D.56, N.58, Q.61, E.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66, H2O.3

1 x D46: N-[2-({[(5-chlorothiophen-2-yl)carbonyl]amino}methyl)phenyl]-5-methyl-4,5,6,7-tetrahydro[1,3]thiazolo[5,4-c]pyridine-2-carboxamide(Non-covalent)

D46.3: 19 residues within 4Å: Chain A: E.83, T.84, Y.85, R.132, E.135, F.162, D.179, A.180, C.181, Q.182, V.203, W.205, G.206, E.207, G.208, C.209, G.216, I.217, Y.218 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.85, A:E.135, A:W.205 Hydrogen bonds: A:G.206, A:G.208, A:G.208 Water bridges: A:R.211 pi-Cation interactions: A:W.205, A:W.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mochizuki, A. et al., Zwitter ionic potent durable orally active Factor Xa inhibitor. To be Published

Release Date

2012-08-29

Peptides

Factor X heavy chain: A
Factor X light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Factor X heavy chain

Factor X light chain

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