SMTL ID : 3tpj.1

APO structure of BACE1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.101 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.101, A:R.136 Salt bridges: A:R.101 SO4.2: 3 residues within 4Å: Chain A: Y.91, Q.93, Q.95 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.91, A:Y.91, A:Q.93, A:Q.95 SO4.3: 2 residues within 4Å: Chain A: T.225, G.226 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.226 SO4.4: 2 residues within 4Å: Chain A: R.337, F.414 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.337 Salt bridges: A:R.337 SO4.5: 2 residues within 4Å: Chain A: R.101 Ligands: URE.13 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.101 Salt bridges: A:R.101 SO4.6: 1 residues within 4Å: Chain A: R.47 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.47 SO4.7: 7 residues within 4Å: Chain A: T.122, R.136, A.137, N.138, E.174, S.179, Q.183 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.136, A:N.138, A:E.174, A:Q.183 Water bridges: A:E.174, A:E.174, A:E.174, A:S.179 SO4.8: 2 residues within 4Å: Chain A: R.234, N.425 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.234, A:R.234, A:N.425 Salt bridges: A:R.234

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 2 residues within 4Å: Chain A: P.131, N.132 Ligand excluded by PLIP

4 x URE: UREA(Non-functional Binders)

URE.10: 4 residues within 4Å: Chain A: V.107, Y.108, R.168, P.169 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.108, A:Y.108, A:P.169 Water bridges: A:R.168 URE.11: 3 residues within 4Å: Chain A: F.39, P.187, G.217 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.217 Water bridges: A:G.217 URE.12: 2 residues within 4Å: Chain A: P.128, H.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.41 Water bridges: A:E.41, A:H.129 URE.13: 3 residues within 4Å: Chain A: R.101, D.102 Ligands: SO4.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.102, A:D.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Y.C. et al., Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations. Acta Crystallogr.,Sect.D (2012)

Release Date

2011-11-23

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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