SMTL ID : 3ttz.2 (1 other biounit)

Crystal structure of a topoisomerase ATPase inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

1 x 07N: 2-[(3S,4R)-4-{[(3,4-dichloro-5-methyl-1H-pyrrol-2-yl)carbonyl]amino}-3-fluoropiperidin-1-yl]-1,3-thiazole-5-carboxylic acid(Non-covalent)

07N.1: 12 residues within 4Å: Chain A: I.39, N.42, S.43, E.46, D.69, R.72, G.73, I.74, P.75, R.109, T.138, I.140 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.39, A:T.138, A:I.140 Hydrogen bonds: A:D.69, A:R.109, A:T.138 Water bridges: A:E.46, A:R.109 pi-Cation interactions: A:R.72

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 2 residues within 4Å: Chain A: D.41, N.42 No protein-ligand interaction detected (PLIP) MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain A: G.173, H.193 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:G.173, A:H.193, H2O.3, H2O.4, H2O.4, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sherer, B.A. et al., Pyrrolamide DNA gyrase inhibitors: Optimization of antibacterial activity and efficacy. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-11-16

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA gyrase subunit B

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