SMTL ID : 3u2d.2 (1 other biounit)

S. aureus GyrB ATPase domain in complex with small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x 08B: 4-bromo-5-methyl-N-[1-(3-nitropyridin-2-yl)piperidin-4-yl]-1H-pyrrole-2-carboxamide(Non-covalent)

08B.1: 12 residues within 4Å: Chain A: I.39, N.42, S.43, E.46, D.69, R.72, G.73, I.74, P.75, R.109, T.138, I.140 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.39, A:N.42, A:I.74, A:P.75, A:I.140 Hydrogen bonds: A:D.69, A:R.109, A:T.138

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: N.42 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain A: G.173, H.193 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.173, A:H.193, H2O.3, H2O.4, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eakin, A.E. et al., Pyrrolamide DNA gyrase inhibitors: fragment-based nuclear magnetic resonance screening to identify antibacterial agents. Antimicrob.Agents Chemother. (2012)

Release Date

2012-01-11

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA gyrase subunit B

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