SMTL ID : 3u2k.2 (1 other biounit)

S. aureus GyrB ATPase domain in complex with a small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x 087: 2-chloro-6-(4-{[(3,4-dichloro-5-methyl-1H-pyrrol-2-yl)carbonyl]amino}piperidin-1-yl)pyridine-4-carboxamide(Non-covalent)

087.1: 12 residues within 4Å: Chain A: I.39, N.42, S.43, E.46, D.69, R.72, G.73, I.74, P.75, R.109, T.138, I.140 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.39, A:P.75, A:T.138, A:I.140 Hydrogen bonds: A:D.69, A:R.109, A:R.109, A:T.138 Water bridges: A:E.46

3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain A: G.173, H.193 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:G.173, A:H.193, H2O.2, H2O.2, H2O.4, H2O.5 MG.4: 2 residues within 4Å: Chain A: D.41, N.42 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eakin, A.E. et al., Pyrrolamide DNA gyrase inhibitors: fragment-based nuclear magnetic resonance screening to identify antibacterial agents. Antimicrob.Agents Chemother. (2012)

Release Date

2012-01-11

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA gyrase subunit B

Related Entries With Identical Sequence