SMTL ID : 3tus.1

Crystal Structure of C-lobe of Bovine lactoferrin Complexed with Meta-hydroxy benzoic acid at 2.5 A Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: G.131, L.132, N.135, T.326, N.330 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.330 NAG-NAG.2: 9 residues within 4Å: Chain A: K.75, S.77, L.93, N.204, D.205, W.208, R.225, A.243, Q.244 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.208 Hydrogen bonds: A:S.77

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 7 residues within 4Å: Chain A: Y.1, Q.23, S.24, N.27, H.272, Q.273, L.276 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.273 Water bridges: A:H.272

1 x FE: FE (III) ION(Non-covalent)

FE.4: 5 residues within 4Å: Chain A: D.54, Y.92, Y.185, H.254 Ligands: CO3.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.54, A:Y.92, A:Y.185, A:H.254

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 2 residues within 4Å: Chain A: G.312, E.318 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.318, A:E.318, H2O.8 ZN.6: 1 residues within 4Å: Chain A: H.247 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.247

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.7: 10 residues within 4Å: Chain A: D.54, Y.92, T.118, R.122, T.123, A.124, G.125, Y.185, H.254 Ligands: FE.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.122

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 2 residues within 4Å: Chain A: R.229, R.237 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.237 Salt bridges: A:K.100, A:R.229, A:R.237

1 x 3HB: 3-HYDROXYBENZOIC ACID(Non-covalent)

3HB.9: 6 residues within 4Å: Chain A: T.89, E.90, G.91, P.252, N.253, Y.319 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.90, A:Y.319

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shukla, P.K. et al., Crystal Structure of C-lobe of Bovine lactoferrin Complexed with Meta-hydroxy benzoic acid at 2.5 A Resolution. To be Published

Release Date

2011-10-19

Peptides

Lactotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactotransferrin

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