SMTL ID : 3tyd.1 (1 other biounit)

Dihydropteroate Synthase in complex with PPi and DHP+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.1: 6 residues within 4Å: Chain A: I.45, N.47, S.86, R.274, H.276 Ligands: XHP.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.47 Water bridges: A:H.276 Salt bridges: A:R.274, A:H.276 POP.9: 6 residues within 4Å: Chain B: I.45, N.47, S.86, R.274, H.276 Ligands: XHP.10 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.47 Water bridges: B:H.276 Salt bridges: B:R.274, B:H.276

2 x XHP: 2-amino-6-methylidene-6,7-dihydropteridin-4(3H)-one(Non-covalent)

XHP.2: 11 residues within 4Å: Chain A: D.121, N.140, I.142, M.165, D.204, F.209, L.234, G.236, K.240, R.274 Ligands: POP.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.140, A:N.140, A:K.240 Water bridges: A:G.236, A:G.236 Salt bridges: A:D.121, A:D.204 pi-Cation interactions: A:R.274 XHP.10: 11 residues within 4Å: Chain B: D.121, N.140, I.142, M.165, D.204, F.209, L.234, G.236, K.240, R.274 Ligands: POP.9 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.140, B:N.140, B:K.240 Water bridges: B:G.236, B:G.236 Salt bridges: B:D.121, B:D.204 pi-Cation interactions: B:R.274

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: K.39, K.286 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.39, A:K.286 SO4.4: 2 residues within 4Å: Chain A: K.70, R.73 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.70, A:R.73 SO4.5: 3 residues within 4Å: Chain A: E.218, R.221, N.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.222 Salt bridges: A:R.221 SO4.6: 1 residues within 4Å: Chain A: R.239 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.239 SO4.7: 2 residues within 4Å: Chain A: S.241, R.254 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.254 SO4.8: 1 residues within 4Å: Chain A: K.129 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.129 SO4.11: 2 residues within 4Å: Chain B: K.39, K.286 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.39, B:K.286 SO4.12: 2 residues within 4Å: Chain B: K.70, R.73 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.70, B:R.73 SO4.13: 3 residues within 4Å: Chain B: E.218, R.221, N.222 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.222 Salt bridges: B:R.221 SO4.14: 1 residues within 4Å: Chain B: R.239 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.239 SO4.15: 2 residues within 4Å: Chain B: S.241, R.254 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.254 SO4.16: 1 residues within 4Å: Chain B: K.129 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yun, M.K. et al., Catalysis and sulfa drug resistance in dihydropteroate synthase. Science (2012)

Release Date

2012-03-14

Peptides

Dihydropteroate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Dihydropteroate synthase

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