SMTL ID : 3tye.2 (1 other biounit)

Dihydropteroate Synthase in complex with DHP-STZ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x XHP: 2-amino-6-methylidene-6,7-dihydropteridin-4(3H)-one(Non-covalent)

XHP.1: 12 residues within 4Å: Chain A: D.121, N.140, I.142, I.163, M.165, D.204, F.209, G.236, K.240, R.274 Ligands: YTZ.2, SO4.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.209 Hydrogen bonds: A:N.140, A:N.140, A:K.240 Water bridges: A:G.236 Salt bridges: A:D.204 pi-Stacking: A:F.209 pi-Cation interactions: A:R.274 XHP.8: 12 residues within 4Å: Chain B: D.121, N.140, I.142, I.163, M.165, D.204, F.209, G.236, K.240, R.274 Ligands: YTZ.9, SO4.10 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.209 Hydrogen bonds: B:N.140, B:N.140, B:K.240 Water bridges: B:G.236 Salt bridges: B:D.204 pi-Stacking: B:F.209 pi-Cation interactions: B:R.274

2 x YTZ: 4-amino-N-(1,3-thiazol-2-yl)benzenesulfonamide(Non-covalent)

YTZ.2: 5 residues within 4Å: Chain A: G.208, F.209, K.240, S.241 Ligands: XHP.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.209 Hydrogen bonds: A:S.241, A:S.241 pi-Cation interactions: A:K.240 YTZ.9: 5 residues within 4Å: Chain B: G.208, F.209, K.240, S.241 Ligands: XHP.8 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.209 Hydrogen bonds: B:S.241, B:S.241 pi-Cation interactions: B:K.240

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.274, H.276 Ligands: XHP.1 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.274, A:H.276 SO4.4: 1 residues within 4Å: Chain A: R.239 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.239 SO4.5: 2 residues within 4Å: Chain A: K.70, R.73 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.70, A:R.73 SO4.6: 3 residues within 4Å: Chain A: E.218, R.221, N.222 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.218, A:N.222 Salt bridges: A:R.221 SO4.7: 3 residues within 4Å: Chain A: E.75, R.283 Chain B: L.249 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.283 SO4.10: 3 residues within 4Å: Chain B: R.274, H.276 Ligands: XHP.8 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.274, B:H.276 SO4.11: 1 residues within 4Å: Chain B: R.239 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.239 SO4.12: 2 residues within 4Å: Chain B: K.70, R.73 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.70, B:R.73 SO4.13: 3 residues within 4Å: Chain B: E.218, R.221, N.222 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.218, B:N.222 Salt bridges: B:R.221 SO4.14: 3 residues within 4Å: Chain A: L.249 Chain B: E.75, R.283 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yun, M.K. et al., Catalysis and sulfa drug resistance in dihydropteroate synthase. Science (2012)

Release Date

2012-03-14

Peptides

Dihydropteroate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Dihydropteroate synthase

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