SMTL ID : 3u88.2 (1 other biounit)

Crystal structure of human menin in complex with MLL1 and LEDGF

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x CHD: CHOLIC ACID(Non-covalent)

CHD.1: 5 residues within 4Å: Chain A: S.132, Y.133, F.134, K.135, N.203 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.134, A:F.134, A:F.134 Hydrogen bonds: A:S.132, A:K.135, A:N.203 Salt bridges: A:K.135

1 x 0BR: (4beta,8alpha,9R)-6'-methoxy-10,11-dihydrocinchonan-9-ol(Non-covalent)

0BR.2: 8 residues within 4Å: Chain A: W.126, S.130, R.131, S.132, Y.133, K.135, W.198, N.203 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.133, A:W.198, A:N.203 Hydrogen bonds: A:R.131 pi-Cation interactions: A:R.131

1 x GGB: L-CANAVANINE(Non-covalent)

GGB.3: 4 residues within 4Å: Chain A: Y.133, F.134, R.137, K.151 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.134 Hydrogen bonds: A:F.134, A:K.151 Salt bridges: A:R.137, A:K.151

2 x GLV: GLYOXYLIC ACID(Non-covalent)

GLV.4: 6 residues within 4Å: Chain A: K.135, D.136, S.154, W.198, G.200, K.201 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.135, A:S.154, A:S.154, A:G.200 GLV.9: 4 residues within 4Å: Chain A: R.98 Chain C: T.71, Y.74, N.75 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:N.75, A:R.98 Salt bridges: C:R.58, A:R.98

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: R.108, G.111, G.169, R.171 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.108, A:R.171 SO4.6: 2 residues within 4Å: Chain A: K.377, R.446 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.377, A:R.446 SO4.7: 6 residues within 4Å: Chain A: R.330 Chain B: T.11, G.12, R.13, R.14, G.15 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.12, B:G.12, B:R.14, B:G.15 Salt bridges: B:R.14, A:R.330 SO4.8: 3 residues within 4Å: Chain A: G.2 Chain B: R.52 Chain C: K.78 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A Salt bridges: C:K.78, B:R.52 Hydrogen bonds: A:G.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, J. et al., The same pocket in menin binds both MLL and JUND but has opposite effects on transcription. Nature (2012)

Release Date

2012-02-15

Peptides

Menin: A
Histone-lysine N-methyltransferase 2A: B
Lens epithelium-derived growth factor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
N

C
D

Menin

Histone-lysine N-methyltransferase 2A

Lens epithelium-derived growth factor

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