SMTL ID : 7m4t.1

Menin bound to M-1121

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

monomer

Ligands

1 x YQV: methyl {(1S,2R)-2-[(1S)-2-(azetidin-1-yl)-1-(3-fluorophenyl)-1-{1-[(3-methoxy-1-{4-[(1S,4S)-5-propanoyl-2,5-diazabicyclo[2.2.1]heptane-2-sulfonyl]phenyl}azetidin-3-yl)methyl]piperidin-4-yl}ethyl]cyclopentyl}carbamate(Covalent)

YQV.1: 27 residues within 4Å: Chain A: S.155, L.177, S.178, E.179, D.180, H.181, A.182, F.238, C.241, A.242, Y.276, M.278, A.279, N.282, Y.319, M.322, Y.323, G.326, C.329, R.330, W.341, E.359, E.363, V.367, V.371 Ligands: 7PR.4, 7PR.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.238, A:A.242 Hydrogen bonds: A:Y.276, A:Y.323 Salt bridges: A:D.180

5 x 7PR: praseodymium triacetate(Non-covalent)

7PR.2: 2 residues within 4Å: Chain A: E.366, D.370 0 PLIP interactions: 7PR.3: 5 residues within 4Å: Chain A: W.126, S.130, R.131, W.198, D.205 0 PLIP interactions: 7PR.4: 3 residues within 4Å: Chain A: E.359, E.363 Ligands: YQV.1 0 PLIP interactions: 7PR.5: 1 residues within 4Å: Chain A: H.433 1 PLIP interactions: 1 interactions with chain A, Salt bridges: A:H.433 7PR.6: 6 residues within 4Å: Chain A: S.246, L.249, D.252, D.285, L.289 Ligands: YQV.1 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:L.289 Hydrogen bonds: A:D.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, M. et al., Discovery of M-1121 as an Orally Active Covalent Inhibitor of Menin-MLL Interaction Capable of Achieving Complete and Long-Lasting Tumor Regression. J.Med.Chem. (2021)

Release Date

2021-08-11

Peptides

Menin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Menin

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