SMTL ID : 4i80.1

Crystal structure of human menin in complex with a high-affinity macrocyclic peptidomimetics

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x ACE- ARG- TRP- 1E3- PHE- PRO- ALA- ARG- PRO: macrocyclic peptidomimetic(Non-covalent)

ACE-ARG-TRP-1E3-PHE-PRO-ALA-ARG-PRO.1: 23 residues within 4Å: Chain A: D.136, R.137, A.138, D.153, S.154, S.155, S.178, E.179, D.180, H.181, F.238, C.241, N.244, S.246, M.278, N.282, Y.319, Y.323, E.359, E.363 Chain B: D.136, R.137 Ligands: ACE-ARG-TRP-1E3-PHE-PRO-ALA-ARG-PRO.2 15 PLIP interactions: 13 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.238, A:Y.319, A:Y.323 Hydrogen bonds: A:D.136, A:A.138, A:C.241, A:N.244, A:S.246, A:Y.323, A:E.359 Salt bridges: A:D.136, A:E.359, A:E.363, B:D.136 pi-Cation interactions: B:F.134 ACE-ARG-TRP-1E3-PHE-PRO-ALA-ARG-PRO.2: 23 residues within 4Å: Chain A: D.136, R.137 Chain B: D.136, R.137, A.138, D.153, S.154, S.155, S.178, E.179, D.180, H.181, F.238, C.241, N.244, S.246, M.278, N.282, Y.319, Y.323, E.359, E.363 Ligands: ACE-ARG-TRP-1E3-PHE-PRO-ALA-ARG-PRO.1 15 PLIP interactions: 13 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.238, B:Y.319, B:Y.323 Hydrogen bonds: B:D.136, B:A.138, B:C.241, B:N.244, B:S.246, B:Y.319, B:E.359 Salt bridges: B:D.136, B:E.359, B:E.363, A:D.136 pi-Cation interactions: A:F.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, H. et al., Structure-Based Design of High-Affinity Macrocyclic Peptidomimetics to Block the Menin-Mixed Lineage Leukemia 1 (MLL1) Protein-Protein Interaction. J.Med.Chem. (2013)

Release Date

2013-03-06

Peptides

Menin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Menin

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