SMTL ID : 3ud4.1

The C92U mutant c-di-GMP-I riboswitch bound to GpA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x G- A: RNA (5'-R(*GP*A)-3')(Non-functional Binders)

G-A.1: 12 residues within 4Å: Chain B: G.7, A.9, C.10, A.11, G.13, G.14, C.39, A.40, A.41, A.42, U.86, C.87 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: H.31, Q.39 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.1, H2O.1, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, K.D. et al., Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer. Biochemistry (2012)

Release Date

2012-01-04

Peptides

U1 small nuclear ribonucleoprotein A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

U1 small nuclear ribonucleoprotein A

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