SMTL ID : 3ufg.1

The crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni subsp. jejuni NCTC in complex with ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: A.55, T.57, R.82, D.85, N.93, R.94, L.95, Y.98, Q.100, W.139, E.159, V.160, T.161, Q.162, E.180, T.182, G.184, R.187 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.57, A:R.82, A:D.85, A:L.95, A:Y.98, A:E.159, A:Q.162, A:E.180, A:E.180, A:T.182, A:G.184, A:R.187 Salt bridges: A:R.82, A:R.82 pi-Stacking: A:Y.98, A:Y.98 pi-Cation interactions: A:R.187 ATP.2: 18 residues within 4Å: Chain B: T.57, R.82, D.85, N.93, R.94, L.95, Y.98, Q.100, W.139, E.159, V.160, T.161, Q.162, T.164, E.180, T.182, G.184, R.187 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:T.57, B:R.82, B:D.85, B:D.85, B:L.95, B:Q.100, B:E.159, B:T.161, B:Q.162, B:Q.162, B:T.164, B:E.180, B:R.187 Salt bridges: B:R.82 pi-Stacking: B:Y.98, B:Y.98

1 x LEU: LEUCINE(Non-covalent)

LEU.3: 3 residues within 4Å: Chain B: F.58, S.141, S.143 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:F.58 Hydrogen bonds: B:S.141, B:S.143, B:S.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni subsp. jejuni NCTC in complex with ATP. To be Published

Release Date

2011-11-09

Peptides

Glycyl-tRNA synthetase alpha subunit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycyl-tRNA synthetase alpha subunit

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