- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.06 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GAL: beta-D-galactopyranose(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 3 residues within 4Å:- Chain A: S.171, I.172, T.174
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.171, A:T.174
EDO.6: 4 residues within 4Å:- Chain B: K.33, G.50, K.51, L.248
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.50
EDO.7: 4 residues within 4Å:- Chain B: A.65, G.66, L.237, K.239
No protein-ligand interaction detected (PLIP)EDO.16: 3 residues within 4Å:- Chain B: S.210
- Chain D: T.175, I.212
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:T.175, D:T.175
EDO.17: 2 residues within 4Å:- Chain D: L.237, K.239
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.239
- 4 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: G.126, D.148, N.152, W.155, D.156
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.148, A:D.156, H2O.1
CA.10: 4 residues within 4Å:- Chain B: D.148, F.150, N.152, D.156
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.148, B:F.150, B:D.156, H2O.2, H2O.3
CA.13: 4 residues within 4Å:- Chain C: D.148, F.150, N.152, D.156
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.148, C:F.150, C:D.156, H2O.4, H2O.4
CA.19: 4 residues within 4Å:- Chain D: D.148, F.150, N.152, D.156
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.148, D:D.148, D:F.150, D:D.156, H2O.6
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.4: 4 residues within 4Å:- Chain A: E.146, D.148, D.156, H.161
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.146, A:D.156, A:H.161, H2O.1, H2O.1
MN.11: 4 residues within 4Å:- Chain B: E.146, D.148, D.156, H.161
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.146, B:D.148, B:D.156, B:H.161, H2O.3, H2O.3
MN.14: 4 residues within 4Å:- Chain C: E.146, D.148, D.156, H.161
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.146, C:D.148, C:D.156, C:H.161, H2O.4
MN.20: 4 residues within 4Å:- Chain D: E.146, D.148, D.156, H.161
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:E.146, D:D.148, D:D.156, D:H.161
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.8: 4 residues within 4Å:- Chain B: W.155, S.171, K.173, T.174
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:W.155, B:T.174, B:T.174, B:T.174
- Water bridges: B:S.171
PEG.9: 2 residues within 4Å:- Chain B: L.237
- Ligands: GAL.5
No protein-ligand interaction detected (PLIP)PEG.18: 5 residues within 4Å:- Chain D: V.62, P.101, N.102, S.105, G.240
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:S.105, D:S.105
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shetty, K.N. et al., Affinity of a galactose-specific legume lectin from Dolichos lablab to adenine revealed by X-ray cystallography. Iubmb Life (2013)
- Release Date
- 2012-11-14
- Peptides
- Legume lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.06 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GAL: beta-D-galactopyranose(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shetty, K.N. et al., Affinity of a galactose-specific legume lectin from Dolichos lablab to adenine revealed by X-ray cystallography. Iubmb Life (2013)
- Release Date
- 2012-11-14
- Peptides
- Legume lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D