SMTL ID : 3v7z.1 (1 other biounit)

Carboxypeptidase T with GEMSA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.56, E.57, E.59, E.61, E.104, R.189 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.56, A:E.57, A:E.61, A:E.104, H2O.2, H2O.2 CA.2: 5 residues within 4Å: Chain A: S.50, D.51, E.57, E.59 Ligands: CA.27 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.50, A:D.51, A:E.57, A:E.59, H2O.2 CA.3: 3 residues within 4Å: Chain A: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.7, A:Y.9, A:E.14, H2O.2, H2O.2 CA.27: 5 residues within 4Å: Chain A: D.51, E.57, E.59, N.101 Ligands: CA.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.51, A:E.59, A:N.101, H2O.2, H2O.2

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: Y.5, D.291, E.292 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.291

1 x GEM: (2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID(Non-covalent)

GEM.5: 16 residues within 4Å: Chain A: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, G.215, A.251, S.252, Y.255, T.257, E.277 Ligands: ZN.8, GOL.20 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.146, A:Y.255, A:Y.255, A:Y.255, A:Y.255, A:Y.255, A:T.257 Water bridges: A:R.129, A:Y.206, A:Y.206 Salt bridges: A:H.69, A:H.69, A:R.129, A:R.129, A:R.147, A:H.204

20 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 3 residues within 4Å: Chain A: Y.125, Y.288 Ligands: GOL.24 Ligand excluded by PLIP GOL.7: 6 residues within 4Å: Chain A: V.190, G.193, K.194, Q.195, Q.268, H.269 Ligand excluded by PLIP GOL.10: 3 residues within 4Å: Chain A: H.10, K.18 Ligands: GOL.21 Ligand excluded by PLIP GOL.11: 5 residues within 4Å: Chain A: Y.12, N.13, R.42, E.117 Ligands: GOL.13 Ligand excluded by PLIP GOL.12: 4 residues within 4Å: Chain A: F.33, Y.106, F.185, R.189 Ligand excluded by PLIP GOL.13: 5 residues within 4Å: Chain A: D.1, N.11, E.117, I.120 Ligands: GOL.11 Ligand excluded by PLIP GOL.14: 3 residues within 4Å: Chain A: E.40, G.41, R.42 Ligand excluded by PLIP GOL.15: 3 residues within 4Å: Chain A: P.3, S.4, Y.5 Ligand excluded by PLIP GOL.16: 4 residues within 4Å: Chain A: K.152, C.156, Y.216 Ligands: GOL.18 Ligand excluded by PLIP GOL.17: 6 residues within 4Å: Chain A: Y.81, D.84, L.85, Q.88, N.89 Ligands: GOL.21 Ligand excluded by PLIP GOL.18: 4 residues within 4Å: Chain A: T.217, T.219, P.222 Ligands: GOL.16 Ligand excluded by PLIP GOL.19: 2 residues within 4Å: Chain A: T.226, Q.227 Ligand excluded by PLIP GOL.20: 7 residues within 4Å: Chain A: R.129, R.147, E.166, T.167, Y.255 Ligands: GEM.5, GOL.26 Ligand excluded by PLIP GOL.21: 9 residues within 4Å: Chain A: H.10, K.18, E.77, L.80, Y.81, D.84, I.294 Ligands: GOL.10, GOL.17 Ligand excluded by PLIP GOL.22: 3 residues within 4Å: Chain A: W.153, R.171, S.172 Ligand excluded by PLIP GOL.23: 2 residues within 4Å: Chain A: F.174, R.183 Ligand excluded by PLIP GOL.24: 5 residues within 4Å: Chain A: Y.283, N.284, P.285, Y.288 Ligands: GOL.6 Ligand excluded by PLIP GOL.25: 4 residues within 4Å: Chain A: T.239, Y.307, K.311, V.318 Ligand excluded by PLIP GOL.26: 4 residues within 4Å: Chain A: Y.206, S.207, F.287 Ligands: GOL.20 Ligand excluded by PLIP GOL.28: 5 residues within 4Å: Chain A: G.150, A.173, F.174, W.264 Ligands: SO4.29 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.8: 4 residues within 4Å: Chain A: H.69, E.72, H.204 Ligands: GEM.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:E.72, A:E.72, A:H.204

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 4 residues within 4Å: Chain A: V.16, N.20, K.32, W.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.20 Salt bridges: A:K.32 SO4.29: 5 residues within 4Å: Chain A: R.183, N.187, W.264, Q.268 Ligands: GOL.28 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.187, A:W.264 Water bridges: A:Q.268, A:Q.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akparov, V.K.h. et al., Structural insights into the broad substrate specificity of carboxypeptidase T from Thermoactinomyces vulgaris. Febs J. (2015)

Release Date

2012-12-26

Peptides

Carboxypeptidase T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxypeptidase T

Related Entries With Identical Sequence