SMTL ID : 3v7z.2 (1 other biounit)

Carboxypeptidase T with GEMSA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

homo-hexamer

Ligands

24 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.56, E.57, E.59, E.61, E.104, R.189 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.56, A:E.57, A:E.61, A:E.104, H2O.2, H2O.2 CA.2: 5 residues within 4Å: Chain A: S.50, D.51, E.57, E.59 Ligands: CA.27 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.50, A:D.51, A:E.57, A:E.59, H2O.2 CA.3: 3 residues within 4Å: Chain A: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.7, A:Y.9, A:E.14, H2O.2, H2O.2 CA.27: 5 residues within 4Å: Chain A: D.51, E.57, E.59, N.101 Ligands: CA.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.51, A:E.59, A:N.101, H2O.2, H2O.2 CA.30: 6 residues within 4Å: Chain B: D.56, E.57, E.59, E.61, E.104, R.189 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.56, B:E.57, B:E.61, B:E.104, H2O.15, H2O.15 CA.31: 5 residues within 4Å: Chain B: S.50, D.51, E.57, E.59 Ligands: CA.56 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.50, B:D.51, B:E.57, B:E.59, H2O.15 CA.32: 3 residues within 4Å: Chain B: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.7, B:Y.9, B:E.14, H2O.15, H2O.15 CA.56: 5 residues within 4Å: Chain B: D.51, E.57, E.59, N.101 Ligands: CA.31 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.51, B:E.59, B:N.101, H2O.15, H2O.15 CA.59: 6 residues within 4Å: Chain C: D.56, E.57, E.59, E.61, E.104, R.189 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.56, C:E.57, C:E.61, C:E.104, H2O.28, H2O.28 CA.60: 5 residues within 4Å: Chain C: S.50, D.51, E.57, E.59 Ligands: CA.85 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:S.50, C:D.51, C:E.57, C:E.59, H2O.28 CA.61: 3 residues within 4Å: Chain C: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:S.7, C:Y.9, C:E.14, H2O.28, H2O.28 CA.85: 5 residues within 4Å: Chain C: D.51, E.57, E.59, N.101 Ligands: CA.60 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.51, C:E.59, C:N.101, H2O.28, H2O.28 CA.88: 6 residues within 4Å: Chain D: D.56, E.57, E.59, E.61, E.104, R.189 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.56, D:E.57, D:E.61, D:E.104, H2O.41, H2O.41 CA.89: 5 residues within 4Å: Chain D: S.50, D.51, E.57, E.59 Ligands: CA.114 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:S.50, D:D.51, D:E.57, D:E.59, H2O.41 CA.90: 3 residues within 4Å: Chain D: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:S.7, D:Y.9, D:E.14, H2O.41, H2O.41 CA.114: 5 residues within 4Å: Chain D: D.51, E.57, E.59, N.101 Ligands: CA.89 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.51, D:E.59, D:N.101, H2O.41, H2O.41 CA.117: 6 residues within 4Å: Chain E: D.56, E.57, E.59, E.61, E.104, R.189 6 PLIP interactions: 4 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.56, E:E.57, E:E.61, E:E.104, H2O.54, H2O.54 CA.118: 5 residues within 4Å: Chain E: S.50, D.51, E.57, E.59 Ligands: CA.143 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:S.50, E:D.51, E:E.57, E:E.59, H2O.54 CA.119: 3 residues within 4Å: Chain E: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:S.7, E:Y.9, E:E.14, H2O.54, H2O.54 CA.143: 5 residues within 4Å: Chain E: D.51, E.57, E.59, N.101 Ligands: CA.118 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.51, E:E.59, E:N.101, H2O.54, H2O.54 CA.146: 6 residues within 4Å: Chain F: D.56, E.57, E.59, E.61, E.104, R.189 6 PLIP interactions: 4 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.56, F:E.57, F:E.61, F:E.104, H2O.67, H2O.67 CA.147: 5 residues within 4Å: Chain F: S.50, D.51, E.57, E.59 Ligands: CA.172 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:S.50, F:D.51, F:E.57, F:E.59, H2O.67 CA.148: 3 residues within 4Å: Chain F: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:S.7, F:Y.9, F:E.14, H2O.67, H2O.67 CA.172: 5 residues within 4Å: Chain F: D.51, E.57, E.59, N.101 Ligands: CA.147 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.51, F:E.59, F:N.101, H2O.67, H2O.67

6 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: Y.5, D.291, E.292 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.292 NA.33: 3 residues within 4Å: Chain B: Y.5, D.291, E.292 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.292 NA.62: 3 residues within 4Å: Chain C: Y.5, D.291, E.292 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.291 NA.91: 3 residues within 4Å: Chain D: Y.5, D.291, E.292 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.291 NA.120: 3 residues within 4Å: Chain E: Y.5, D.291, E.292 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:E.292 NA.149: 3 residues within 4Å: Chain F: Y.5, D.291, E.292 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:Y.5

6 x GEM: (2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID(Non-covalent)

GEM.5: 16 residues within 4Å: Chain A: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, G.215, A.251, S.252, Y.255, T.257, E.277 Ligands: ZN.8, GOL.20 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.146, A:Y.255, A:Y.255, A:Y.255, A:Y.255, A:Y.255, A:T.257 Water bridges: A:R.129, A:Y.206, A:Y.206 Salt bridges: A:H.69, A:H.69, A:R.129, A:R.129, A:R.147, A:H.204 GEM.34: 16 residues within 4Å: Chain B: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, G.215, A.251, S.252, Y.255, T.257, E.277 Ligands: ZN.37, GOL.49 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:N.146, B:Y.255, B:Y.255, B:Y.255, B:Y.255, B:Y.255, B:T.257 Water bridges: B:R.129, B:Y.206, B:Y.206 Salt bridges: B:H.69, B:H.69, B:R.129, B:R.129, B:R.147, B:H.204 GEM.63: 16 residues within 4Å: Chain C: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, G.215, A.251, S.252, Y.255, T.257, E.277 Ligands: ZN.66, GOL.78 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:N.146, C:Y.255, C:Y.255, C:Y.255, C:Y.255, C:Y.255, C:T.257 Water bridges: C:R.129, C:Y.206, C:Y.206 Salt bridges: C:H.69, C:H.69, C:R.129, C:R.129, C:R.147, C:H.204 GEM.92: 16 residues within 4Å: Chain D: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, G.215, A.251, S.252, Y.255, T.257, E.277 Ligands: ZN.95, GOL.107 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:N.146, D:Y.255, D:Y.255, D:Y.255, D:Y.255, D:T.257, D:T.257 Water bridges: D:R.129, D:Y.206, D:Y.206 Salt bridges: D:H.69, D:H.69, D:R.129, D:R.129, D:R.147, D:H.204 GEM.121: 16 residues within 4Å: Chain E: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, G.215, A.251, S.252, Y.255, T.257, E.277 Ligands: ZN.124, GOL.136 16 PLIP interactions: 16 interactions with chain E Hydrogen bonds: E:N.146, E:Y.255, E:Y.255, E:Y.255, E:Y.255, E:T.257, E:T.257 Water bridges: E:R.129, E:Y.206, E:Y.206 Salt bridges: E:H.69, E:H.69, E:R.129, E:R.129, E:R.147, E:H.204 GEM.150: 16 residues within 4Å: Chain F: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, G.215, A.251, S.252, Y.255, T.257, E.277 Ligands: ZN.153, GOL.165 16 PLIP interactions: 16 interactions with chain F Hydrogen bonds: F:N.146, F:Y.255, F:Y.255, F:Y.255, F:Y.255, F:T.257, F:T.257 Water bridges: F:R.129, F:Y.206, F:Y.206 Salt bridges: F:H.69, F:H.69, F:R.129, F:R.129, F:R.147, F:H.204

120 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: Y.125, Y.288 Chain B: S.223 Ligands: GOL.24 Ligand excluded by PLIP GOL.7: 6 residues within 4Å: Chain A: V.190, G.193, K.194, Q.195, Q.268, H.269 Ligand excluded by PLIP GOL.10: 3 residues within 4Å: Chain A: H.10, K.18 Ligands: GOL.21 Ligand excluded by PLIP GOL.11: 5 residues within 4Å: Chain A: Y.12, N.13, R.42, E.117 Ligands: GOL.13 Ligand excluded by PLIP GOL.12: 4 residues within 4Å: Chain A: F.33, Y.106, F.185, R.189 Ligand excluded by PLIP GOL.13: 5 residues within 4Å: Chain A: D.1, N.11, E.117, I.120 Ligands: GOL.11 Ligand excluded by PLIP GOL.14: 3 residues within 4Å: Chain A: E.40, G.41, R.42 Ligand excluded by PLIP GOL.15: 3 residues within 4Å: Chain A: P.3, S.4, Y.5 Ligand excluded by PLIP GOL.16: 7 residues within 4Å: Chain A: K.152, C.156, Y.216 Chain C: R.71, E.166 Ligands: GOL.18, GOL.78 Ligand excluded by PLIP GOL.17: 6 residues within 4Å: Chain A: Y.81, D.84, L.85, Q.88, N.89 Ligands: GOL.21 Ligand excluded by PLIP GOL.18: 7 residues within 4Å: Chain A: T.217, T.219, P.222 Chain C: R.71, F.287 Ligands: GOL.16, GOL.84 Ligand excluded by PLIP GOL.19: 2 residues within 4Å: Chain A: T.226, Q.227 Ligand excluded by PLIP GOL.20: 8 residues within 4Å: Chain A: R.129, R.147, E.166, T.167, Y.255 Ligands: GEM.5, GOL.26, GOL.45 Ligand excluded by PLIP GOL.21: 9 residues within 4Å: Chain A: H.10, K.18, E.77, L.80, Y.81, D.84, I.294 Ligands: GOL.10, GOL.17 Ligand excluded by PLIP GOL.22: 6 residues within 4Å: Chain A: W.153, R.171, S.172 Chain C: S.138, S.139, Y.140 Ligand excluded by PLIP GOL.23: 2 residues within 4Å: Chain A: F.174, R.183 Ligand excluded by PLIP GOL.24: 8 residues within 4Å: Chain A: Y.283, N.284, P.285, Y.288 Chain B: V.221, P.222, S.223 Ligands: GOL.6 Ligand excluded by PLIP GOL.25: 4 residues within 4Å: Chain A: T.239, Y.307, K.311, V.318 Ligand excluded by PLIP GOL.26: 5 residues within 4Å: Chain A: Y.206, S.207, F.287 Ligands: GOL.20, GOL.47 Ligand excluded by PLIP GOL.28: 5 residues within 4Å: Chain A: G.150, A.173, F.174, W.264 Ligands: SO4.29 Ligand excluded by PLIP GOL.35: 4 residues within 4Å: Chain B: Y.125, Y.288 Chain C: S.223 Ligands: GOL.53 Ligand excluded by PLIP GOL.36: 6 residues within 4Å: Chain B: V.190, G.193, K.194, Q.195, Q.268, H.269 Ligand excluded by PLIP GOL.39: 3 residues within 4Å: Chain B: H.10, K.18 Ligands: GOL.50 Ligand excluded by PLIP GOL.40: 5 residues within 4Å: Chain B: Y.12, N.13, R.42, E.117 Ligands: GOL.42 Ligand excluded by PLIP GOL.41: 4 residues within 4Å: Chain B: F.33, Y.106, F.185, R.189 Ligand excluded by PLIP GOL.42: 5 residues within 4Å: Chain B: D.1, N.11, E.117, I.120 Ligands: GOL.40 Ligand excluded by PLIP GOL.43: 3 residues within 4Å: Chain B: E.40, G.41, R.42 Ligand excluded by PLIP GOL.44: 3 residues within 4Å: Chain B: P.3, S.4, Y.5 Ligand excluded by PLIP GOL.45: 7 residues within 4Å: Chain A: R.71, E.166 Chain B: K.152, C.156, Y.216 Ligands: GOL.20, GOL.47 Ligand excluded by PLIP GOL.46: 6 residues within 4Å: Chain B: Y.81, D.84, L.85, Q.88, N.89 Ligands: GOL.50 Ligand excluded by PLIP GOL.47: 7 residues within 4Å: Chain A: R.71, F.287 Chain B: T.217, T.219, P.222 Ligands: GOL.26, GOL.45 Ligand excluded by PLIP GOL.48: 2 residues within 4Å: Chain B: T.226, Q.227 Ligand excluded by PLIP GOL.49: 8 residues within 4Å: Chain B: R.129, R.147, E.166, T.167, Y.255 Ligands: GEM.34, GOL.55, GOL.74 Ligand excluded by PLIP GOL.50: 9 residues within 4Å: Chain B: H.10, K.18, E.77, L.80, Y.81, D.84, I.294 Ligands: GOL.39, GOL.46 Ligand excluded by PLIP GOL.51: 6 residues within 4Å: Chain A: S.138, S.139, Y.140 Chain B: W.153, R.171, S.172 Ligand excluded by PLIP GOL.52: 2 residues within 4Å: Chain B: F.174, R.183 Ligand excluded by PLIP GOL.53: 8 residues within 4Å: Chain B: Y.283, N.284, P.285, Y.288 Chain C: V.221, P.222, S.223 Ligands: GOL.35 Ligand excluded by PLIP GOL.54: 4 residues within 4Å: Chain B: T.239, Y.307, K.311, V.318 Ligand excluded by PLIP GOL.55: 5 residues within 4Å: Chain B: Y.206, S.207, F.287 Ligands: GOL.49, GOL.76 Ligand excluded by PLIP GOL.57: 5 residues within 4Å: Chain B: G.150, A.173, F.174, W.264 Ligands: SO4.58 Ligand excluded by PLIP GOL.64: 4 residues within 4Å: Chain A: S.223 Chain C: Y.125, Y.288 Ligands: GOL.82 Ligand excluded by PLIP GOL.65: 6 residues within 4Å: Chain C: V.190, G.193, K.194, Q.195, Q.268, H.269 Ligand excluded by PLIP GOL.68: 3 residues within 4Å: Chain C: H.10, K.18 Ligands: GOL.79 Ligand excluded by PLIP GOL.69: 5 residues within 4Å: Chain C: Y.12, N.13, R.42, E.117 Ligands: GOL.71 Ligand excluded by PLIP GOL.70: 4 residues within 4Å: Chain C: F.33, Y.106, F.185, R.189 Ligand excluded by PLIP GOL.71: 5 residues within 4Å: Chain C: D.1, N.11, E.117, I.120 Ligands: GOL.69 Ligand excluded by PLIP GOL.72: 3 residues within 4Å: Chain C: E.40, G.41, R.42 Ligand excluded by PLIP GOL.73: 3 residues within 4Å: Chain C: P.3, S.4, Y.5 Ligand excluded by PLIP GOL.74: 7 residues within 4Å: Chain B: R.71, E.166 Chain C: K.152, C.156, Y.216 Ligands: GOL.49, GOL.76 Ligand excluded by PLIP GOL.75: 6 residues within 4Å: Chain C: Y.81, D.84, L.85, Q.88, N.89 Ligands: GOL.79 Ligand excluded by PLIP GOL.76: 7 residues within 4Å: Chain B: R.71, F.287 Chain C: T.217, T.219, P.222 Ligands: GOL.55, GOL.74 Ligand excluded by PLIP GOL.77: 2 residues within 4Å: Chain C: T.226, Q.227 Ligand excluded by PLIP GOL.78: 8 residues within 4Å: Chain C: R.129, R.147, E.166, T.167, Y.255 Ligands: GOL.16, GEM.63, GOL.84 Ligand excluded by PLIP GOL.79: 9 residues within 4Å: Chain C: H.10, K.18, E.77, L.80, Y.81, D.84, I.294 Ligands: GOL.68, GOL.75 Ligand excluded by PLIP GOL.80: 6 residues within 4Å: Chain B: S.138, S.139, Y.140 Chain C: W.153, R.171, S.172 Ligand excluded by PLIP GOL.81: 2 residues within 4Å: Chain C: F.174, R.183 Ligand excluded by PLIP GOL.82: 8 residues within 4Å: Chain A: V.221, P.222, S.223 Chain C: Y.283, N.284, P.285, Y.288 Ligands: GOL.64 Ligand excluded by PLIP GOL.83: 4 residues within 4Å: Chain C: T.239, Y.307, K.311, V.318 Ligand excluded by PLIP GOL.84: 5 residues within 4Å: Chain C: Y.206, S.207, F.287 Ligands: GOL.18, GOL.78 Ligand excluded by PLIP GOL.86: 5 residues within 4Å: Chain C: G.150, A.173, F.174, W.264 Ligands: SO4.87 Ligand excluded by PLIP GOL.93: 4 residues within 4Å: Chain D: Y.125, Y.288 Chain E: S.223 Ligands: GOL.111 Ligand excluded by PLIP GOL.94: 6 residues within 4Å: Chain D: V.190, G.193, K.194, Q.195, Q.268, H.269 Ligand excluded by PLIP GOL.97: 3 residues within 4Å: Chain D: H.10, K.18 Ligands: GOL.108 Ligand excluded by PLIP GOL.98: 5 residues within 4Å: Chain D: Y.12, N.13, R.42, E.117 Ligands: GOL.100 Ligand excluded by PLIP GOL.99: 4 residues within 4Å: Chain D: F.33, Y.106, F.185, R.189 Ligand excluded by PLIP GOL.100: 5 residues within 4Å: Chain D: D.1, N.11, E.117, I.120 Ligands: GOL.98 Ligand excluded by PLIP GOL.101: 3 residues within 4Å: Chain D: E.40, G.41, R.42 Ligand excluded by PLIP GOL.102: 3 residues within 4Å: Chain D: P.3, S.4, Y.5 Ligand excluded by PLIP GOL.103: 7 residues within 4Å: Chain D: K.152, C.156, Y.216 Chain F: R.71, E.166 Ligands: GOL.105, GOL.165 Ligand excluded by PLIP GOL.104: 6 residues within 4Å: Chain D: Y.81, D.84, L.85, Q.88, N.89 Ligands: GOL.108 Ligand excluded by PLIP GOL.105: 7 residues within 4Å: Chain D: T.217, T.219, P.222 Chain F: R.71, F.287 Ligands: GOL.103, GOL.171 Ligand excluded by PLIP GOL.106: 2 residues within 4Å: Chain D: T.226, Q.227 Ligand excluded by PLIP GOL.107: 8 residues within 4Å: Chain D: R.129, R.147, E.166, T.167, Y.255 Ligands: GEM.92, GOL.113, GOL.132 Ligand excluded by PLIP GOL.108: 9 residues within 4Å: Chain D: H.10, K.18, E.77, L.80, Y.81, D.84, I.294 Ligands: GOL.97, GOL.104 Ligand excluded by PLIP GOL.109: 6 residues within 4Å: Chain D: W.153, R.171, S.172 Chain F: S.138, S.139, Y.140 Ligand excluded by PLIP GOL.110: 2 residues within 4Å: Chain D: F.174, R.183 Ligand excluded by PLIP GOL.111: 8 residues within 4Å: Chain D: Y.283, N.284, P.285, Y.288 Chain E: V.221, P.222, S.223 Ligands: GOL.93 Ligand excluded by PLIP GOL.112: 4 residues within 4Å: Chain D: T.239, Y.307, K.311, V.318 Ligand excluded by PLIP GOL.113: 5 residues within 4Å: Chain D: Y.206, S.207, F.287 Ligands: GOL.107, GOL.134 Ligand excluded by PLIP GOL.115: 5 residues within 4Å: Chain D: G.150, A.173, F.174, W.264 Ligands: SO4.116 Ligand excluded by PLIP GOL.122: 4 residues within 4Å: Chain E: Y.125, Y.288 Chain F: S.223 Ligands: GOL.140 Ligand excluded by PLIP GOL.123: 6 residues within 4Å: Chain E: V.190, G.193, K.194, Q.195, Q.268, H.269 Ligand excluded by PLIP GOL.126: 3 residues within 4Å: Chain E: H.10, K.18 Ligands: GOL.137 Ligand excluded by PLIP GOL.127: 5 residues within 4Å: Chain E: Y.12, N.13, R.42, E.117 Ligands: GOL.129 Ligand excluded by PLIP GOL.128: 4 residues within 4Å: Chain E: F.33, Y.106, F.185, R.189 Ligand excluded by PLIP GOL.129: 5 residues within 4Å: Chain E: D.1, N.11, E.117, I.120 Ligands: GOL.127 Ligand excluded by PLIP GOL.130: 3 residues within 4Å: Chain E: E.40, G.41, R.42 Ligand excluded by PLIP GOL.131: 3 residues within 4Å: Chain E: P.3, S.4, Y.5 Ligand excluded by PLIP GOL.132: 7 residues within 4Å: Chain D: R.71, E.166 Chain E: K.152, C.156, Y.216 Ligands: GOL.107, GOL.134 Ligand excluded by PLIP GOL.133: 6 residues within 4Å: Chain E: Y.81, D.84, L.85, Q.88, N.89 Ligands: GOL.137 Ligand excluded by PLIP GOL.134: 7 residues within 4Å: Chain D: R.71, F.287 Chain E: T.217, T.219, P.222 Ligands: GOL.113, GOL.132 Ligand excluded by PLIP GOL.135: 2 residues within 4Å: Chain E: T.226, Q.227 Ligand excluded by PLIP GOL.136: 8 residues within 4Å: Chain E: R.129, R.147, E.166, T.167, Y.255 Ligands: GEM.121, GOL.142, GOL.161 Ligand excluded by PLIP GOL.137: 9 residues within 4Å: Chain E: H.10, K.18, E.77, L.80, Y.81, D.84, I.294 Ligands: GOL.126, GOL.133 Ligand excluded by PLIP GOL.138: 6 residues within 4Å: Chain D: S.138, S.139, Y.140 Chain E: W.153, R.171, S.172 Ligand excluded by PLIP GOL.139: 2 residues within 4Å: Chain E: F.174, R.183 Ligand excluded by PLIP GOL.140: 8 residues within 4Å: Chain E: Y.283, N.284, P.285, Y.288 Chain F: V.221, P.222, S.223 Ligands: GOL.122 Ligand excluded by PLIP GOL.141: 4 residues within 4Å: Chain E: T.239, Y.307, K.311, V.318 Ligand excluded by PLIP GOL.142: 5 residues within 4Å: Chain E: Y.206, S.207, F.287 Ligands: GOL.136, GOL.163 Ligand excluded by PLIP GOL.144: 5 residues within 4Å: Chain E: G.150, A.173, F.174, W.264 Ligands: SO4.145 Ligand excluded by PLIP GOL.151: 4 residues within 4Å: Chain D: S.223 Chain F: Y.125, Y.288 Ligands: GOL.169 Ligand excluded by PLIP GOL.152: 6 residues within 4Å: Chain F: V.190, G.193, K.194, Q.195, Q.268, H.269 Ligand excluded by PLIP GOL.155: 3 residues within 4Å: Chain F: H.10, K.18 Ligands: GOL.166 Ligand excluded by PLIP GOL.156: 5 residues within 4Å: Chain F: Y.12, N.13, R.42, E.117 Ligands: GOL.158 Ligand excluded by PLIP GOL.157: 4 residues within 4Å: Chain F: F.33, Y.106, F.185, R.189 Ligand excluded by PLIP GOL.158: 5 residues within 4Å: Chain F: D.1, N.11, E.117, I.120 Ligands: GOL.156 Ligand excluded by PLIP GOL.159: 3 residues within 4Å: Chain F: E.40, G.41, R.42 Ligand excluded by PLIP GOL.160: 3 residues within 4Å: Chain F: P.3, S.4, Y.5 Ligand excluded by PLIP GOL.161: 7 residues within 4Å: Chain E: R.71, E.166 Chain F: K.152, C.156, Y.216 Ligands: GOL.136, GOL.163 Ligand excluded by PLIP GOL.162: 6 residues within 4Å: Chain F: Y.81, D.84, L.85, Q.88, N.89 Ligands: GOL.166 Ligand excluded by PLIP GOL.163: 7 residues within 4Å: Chain E: R.71, F.287 Chain F: T.217, T.219, P.222 Ligands: GOL.142, GOL.161 Ligand excluded by PLIP GOL.164: 2 residues within 4Å: Chain F: T.226, Q.227 Ligand excluded by PLIP GOL.165: 8 residues within 4Å: Chain F: R.129, R.147, E.166, T.167, Y.255 Ligands: GOL.103, GEM.150, GOL.171 Ligand excluded by PLIP GOL.166: 9 residues within 4Å: Chain F: H.10, K.18, E.77, L.80, Y.81, D.84, I.294 Ligands: GOL.155, GOL.162 Ligand excluded by PLIP GOL.167: 6 residues within 4Å: Chain E: S.138, S.139, Y.140 Chain F: W.153, R.171, S.172 Ligand excluded by PLIP GOL.168: 2 residues within 4Å: Chain F: F.174, R.183 Ligand excluded by PLIP GOL.169: 8 residues within 4Å: Chain D: V.221, P.222, S.223 Chain F: Y.283, N.284, P.285, Y.288 Ligands: GOL.151 Ligand excluded by PLIP GOL.170: 4 residues within 4Å: Chain F: T.239, Y.307, K.311, V.318 Ligand excluded by PLIP GOL.171: 5 residues within 4Å: Chain F: Y.206, S.207, F.287 Ligands: GOL.105, GOL.165 Ligand excluded by PLIP GOL.173: 5 residues within 4Å: Chain F: G.150, A.173, F.174, W.264 Ligands: SO4.174 Ligand excluded by PLIP

6 x ZN: ZINC ION(Non-covalent)

ZN.8: 4 residues within 4Å: Chain A: H.69, E.72, H.204 Ligands: GEM.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:E.72, A:E.72, A:H.204 ZN.37: 4 residues within 4Å: Chain B: H.69, E.72, H.204 Ligands: GEM.34 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.69, B:E.72, B:E.72, B:H.204 ZN.66: 4 residues within 4Å: Chain C: H.69, E.72, H.204 Ligands: GEM.63 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.69, C:E.72, C:E.72, C:H.204 ZN.95: 4 residues within 4Å: Chain D: H.69, E.72, H.204 Ligands: GEM.92 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.69, D:E.72, D:E.72, D:H.204 ZN.124: 4 residues within 4Å: Chain E: H.69, E.72, H.204 Ligands: GEM.121 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.69, E:E.72, E:E.72, E:H.204 ZN.153: 4 residues within 4Å: Chain F: H.69, E.72, H.204 Ligands: GEM.150 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.69, F:E.72, F:E.72, F:H.204

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 4 residues within 4Å: Chain A: V.16, N.20, K.32, W.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.20 Salt bridges: A:K.32 SO4.29: 5 residues within 4Å: Chain A: R.183, N.187, W.264, Q.268 Ligands: GOL.28 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.187, A:W.264 Water bridges: A:Q.268, A:Q.268 SO4.38: 4 residues within 4Å: Chain B: V.16, N.20, K.32, W.45 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.20 Salt bridges: B:K.32 SO4.58: 5 residues within 4Å: Chain B: R.183, N.187, W.264, Q.268 Ligands: GOL.57 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.187, B:W.264 Water bridges: B:Q.268, B:Q.268 SO4.67: 4 residues within 4Å: Chain C: V.16, N.20, K.32, W.45 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.20 Salt bridges: C:K.32 SO4.87: 5 residues within 4Å: Chain C: R.183, N.187, W.264, Q.268 Ligands: GOL.86 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.187, C:W.264 Water bridges: C:Q.268, C:Q.268 SO4.96: 4 residues within 4Å: Chain D: V.16, N.20, K.32, W.45 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.20 Salt bridges: D:K.32 SO4.116: 5 residues within 4Å: Chain D: R.183, N.187, W.264, Q.268 Ligands: GOL.115 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.187, D:W.264 Water bridges: D:Q.268, D:Q.268 SO4.125: 4 residues within 4Å: Chain E: V.16, N.20, K.32, W.45 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.20 Salt bridges: E:K.32 SO4.145: 5 residues within 4Å: Chain E: R.183, N.187, W.264, Q.268 Ligands: GOL.144 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:N.187, E:W.264 Water bridges: E:Q.268, E:Q.268 SO4.154: 4 residues within 4Å: Chain F: V.16, N.20, K.32, W.45 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:N.20 Salt bridges: F:K.32 SO4.174: 5 residues within 4Å: Chain F: R.183, N.187, W.264, Q.268 Ligands: GOL.173 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:N.187, F:W.264 Water bridges: F:Q.268, F:Q.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akparov, V.K.h. et al., Structural insights into the broad substrate specificity of carboxypeptidase T from Thermoactinomyces vulgaris. Febs J. (2015)

Release Date

2012-12-26

Peptides

Carboxypeptidase T: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Carboxypeptidase T

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