- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.57 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
ZN.1: 4 residues within 4Å:- Chain A: H.69, E.72, H.204
- Ligands: BZS.5
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.69, A:E.72, A:E.72, A:H.204
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 3 residues within 4Å:- Chain A: S.7, Y.9, E.14
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:S.7, A:Y.9, A:E.14, H2O.1, H2O.3
CA.3: 4 residues within 4Å:- Chain A: S.50, D.51, E.57, E.59
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:S.50, A:D.51, A:E.57, A:E.59, H2O.4
CA.4: 2 residues within 4Å:- Chain A: Y.5, D.291
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:Y.5, A:D.291, H2O.3, H2O.7
CA.27: 6 residues within 4Å:- Chain A: D.56, E.57, E.59, E.61, E.104, R.189
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.56, A:E.57, A:E.61, A:E.104, H2O.7
- 1 x BZS: L-BENZYLSUCCINIC ACID(Non-covalent)
BZS.5: 17 residues within 4Å:- Chain A: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, A.251, L.254, Y.255, T.257, D.260, E.277
- Ligands: ZN.1, GOL.12, GOL.17
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:L.211, A:A.251, A:L.254, A:Y.255
- Hydrogen bonds: A:N.146
- Water bridges: A:R.129, A:Y.206
- Salt bridges: A:H.69, A:H.69, A:R.129, A:R.129, A:R.147, A:H.204
- pi-Cation interactions: A:R.147
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 4 residues within 4Å:- Chain A: V.16, N.20, K.32, W.45
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.20
- Water bridges: A:W.45
- Salt bridges: A:K.32
SO4.28: 6 residues within 4Å:- Chain A: F.174, R.183, N.187, W.264, Q.268
- Ligands: GOL.29
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.187, A:N.187
- Water bridges: A:R.183, A:Q.268
- 24 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 4 residues within 4Å:- Chain A: H.10, K.18, D.84
- Ligands: GOL.14
Ligand excluded by PLIPGOL.8: 5 residues within 4Å:- Chain A: Y.12, N.13, R.42, E.117
- Ligands: GOL.15
Ligand excluded by PLIPGOL.9: 6 residues within 4Å:- Chain A: F.33, S.34, I.35, D.184, F.185
- Ligands: GOL.10
Ligand excluded by PLIPGOL.10: 6 residues within 4Å:- Chain A: K.31, F.33, K.48, Y.106, R.189
- Ligands: GOL.9
Ligand excluded by PLIPGOL.11: 3 residues within 4Å:- Chain A: R.71, E.166
- Ligands: GOL.12
Ligand excluded by PLIPGOL.12: 8 residues within 4Å:- Chain A: R.71, R.129, E.166, T.167, Y.255
- Ligands: BZS.5, GOL.11, GOL.17
Ligand excluded by PLIPGOL.13: 2 residues within 4Å:- Chain A: T.226, Q.227
Ligand excluded by PLIPGOL.14: 8 residues within 4Å:- Chain A: H.10, K.18, E.77, L.80, Y.81, D.84, I.294
- Ligands: GOL.7
Ligand excluded by PLIPGOL.15: 5 residues within 4Å:- Chain A: D.1, N.11, E.117, I.120
- Ligands: GOL.8
Ligand excluded by PLIPGOL.16: 3 residues within 4Å:- Chain A: N.25, P.27, N.28
Ligand excluded by PLIPGOL.17: 6 residues within 4Å:- Chain A: Y.206, S.207, Y.255, E.277
- Ligands: BZS.5, GOL.12
Ligand excluded by PLIPGOL.18: 4 residues within 4Å:- Chain A: Y.118, W.128, R.132, V.141
Ligand excluded by PLIPGOL.19: 6 residues within 4Å:- Chain A: V.190, G.193, K.194, Q.195, Q.268, H.269
Ligand excluded by PLIPGOL.20: 6 residues within 4Å:- Chain A: G.157, G.158, S.159, S.160, T.167, I.256
Ligand excluded by PLIPGOL.21: 4 residues within 4Å:- Chain A: L.209, Q.249, D.253, L.254
Ligand excluded by PLIPGOL.22: 2 residues within 4Å:- Chain A: Y.125, Y.288
Ligand excluded by PLIPGOL.23: 4 residues within 4Å:- Chain A: G.137, S.138, S.139, Y.140
Ligand excluded by PLIPGOL.24: 3 residues within 4Å:- Chain A: S.299, K.302, E.303
Ligand excluded by PLIPGOL.25: 4 residues within 4Å:- Chain A: S.7, G.8, D.291, E.292
Ligand excluded by PLIPGOL.26: 4 residues within 4Å:- Chain A: E.59, P.60, N.102, D.313
Ligand excluded by PLIPGOL.29: 4 residues within 4Å:- Chain A: G.150, F.174, W.264
- Ligands: SO4.28
Ligand excluded by PLIPGOL.30: 4 residues within 4Å:- Chain A: R.95, Y.307, E.310, K.311
Ligand excluded by PLIPGOL.31: 5 residues within 4Å:- Chain A: N.89, D.93, I.96, K.302
- Ligands: GOL.32
Ligand excluded by PLIPGOL.32: 4 residues within 4Å:- Chain A: Y.81, S.299, K.302
- Ligands: GOL.31
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Akparov, V.K.h. et al., Structural insights into the broad substrate specificity of carboxypeptidase T from Thermoactinomyces vulgaris. Febs J. (2015)
- Release Date
- 2013-02-27
- Peptides
- Carboxypeptidase T: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.57 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 1 x BZS: L-BENZYLSUCCINIC ACID(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 24 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Akparov, V.K.h. et al., Structural insights into the broad substrate specificity of carboxypeptidase T from Thermoactinomyces vulgaris. Febs J. (2015)
- Release Date
- 2013-02-27
- Peptides
- Carboxypeptidase T: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A