SMTL ID : 3v9l.1

Crystal structure of mouse 1-pyrroline-5-carboxylate dehydrogenase complexed with NAD+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: Q.420, C.421, N.422, Y.428, E.430 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.428, A:E.430 GOL.2: 3 residues within 4Å: Chain A: R.408, S.409, P.411 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.408

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 26 residues within 4Å: Chain A: I.207, S.208, P.209, F.210, N.211, I.215, K.233, S.235, G.266, P.267, G.270, F.284, T.285, G.286, S.287, T.290, H.293, L.294, E.314, C.315, G.316, C.348, E.447, F.449, L.478, F.520 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.215, A:T.285 Hydrogen bonds: A:S.208, A:F.210, A:K.233, A:G.270, A:S.287, A:T.290, A:G.316, A:E.447 Water bridges: A:K.233, A:D.236, A:G.266, A:G.266, A:P.267, A:H.293, A:H.293, A:E.314, A:S.526 NAD.4: 26 residues within 4Å: Chain B: I.207, S.208, P.209, F.210, N.211, I.215, K.233, S.235, G.266, P.267, G.270, F.284, T.285, G.286, S.287, T.290, H.293, L.294, E.314, C.315, G.316, C.348, E.447, F.449, L.478, F.520 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:P.209, B:I.215, B:T.285 Hydrogen bonds: B:S.208, B:F.210, B:K.233, B:G.270, B:S.287, B:T.290, B:G.316, B:E.447 Water bridges: B:K.233, B:D.236, B:G.266, B:G.266, B:P.267, B:H.293, B:E.314, B:E.314, B:E.447

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Srivastava, D. et al., The Three-Dimensional Structural Basis of Type II Hyperprolinemia. J.Mol.Biol. (2012)

Release Date

2012-05-02

Peptides

Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial

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