SMTL ID : 3vcd.1

Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group R32

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-24-mer

Ligands

78 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: M.17, T.36, F.42 Chain B: Y.137, Q.180 Ligand excluded by PLIP SO4.2: 7 residues within 4Å: Chain A: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain B: K.35, T.36 Chain C: Q.180, G.184 Ligand excluded by PLIP SO4.4: 7 residues within 4Å: Chain B: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain B: D.143, V.144 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain A: Y.137, Q.180, G.184 Chain C: K.35, T.36 Ligand excluded by PLIP SO4.7: 7 residues within 4Å: Chain C: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain C: D.143, V.144 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain D: M.17, K.35, T.36, F.42 Chain E: Q.180 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain D: R.172 Chain F: K.25 Ligand excluded by PLIP SO4.11: 7 residues within 4Å: Chain D: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain D: H.78, S.80 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain D: V.91, D.92, K.93 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain D: K.25 Chain E: R.172 Ligand excluded by PLIP SO4.15: 1 residues within 4Å: Chain E: H.174 Ligand excluded by PLIP SO4.16: 6 residues within 4Å: Chain E: M.17, K.35, T.36, F.42 Chain F: Y.137, Q.180 Ligand excluded by PLIP SO4.17: 7 residues within 4Å: Chain E: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain F: D.143, V.144, S.145 Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain D: Y.137, Q.180 Chain F: M.17, T.36, F.42 Ligand excluded by PLIP SO4.20: 7 residues within 4Å: Chain F: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain G: K.35, T.36, F.42 Chain W: Q.180 Ligand excluded by PLIP SO4.22: 7 residues within 4Å: Chain G: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain H: K.35, T.36, F.42 Chain P: Y.137, Q.180 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain H: K.93, R.94, R.172 Ligand excluded by PLIP SO4.25: 7 residues within 4Å: Chain H: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain H: V.91, D.92, K.93, Q.95 Ligand excluded by PLIP SO4.28: 5 residues within 4Å: Chain I: M.17, T.36, F.42 Chain J: Y.137, Q.180 Ligand excluded by PLIP SO4.29: 7 residues within 4Å: Chain I: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain J: K.35, T.36 Chain K: Q.180, G.184 Ligand excluded by PLIP SO4.31: 7 residues within 4Å: Chain J: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.32: 2 residues within 4Å: Chain J: D.143, V.144 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain I: Y.137, Q.180, G.184 Chain K: K.35, T.36 Ligand excluded by PLIP SO4.34: 7 residues within 4Å: Chain K: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.35: 2 residues within 4Å: Chain K: D.143, V.144 Ligand excluded by PLIP SO4.36: 5 residues within 4Å: Chain L: M.17, K.35, T.36, F.42 Chain M: Q.180 Ligand excluded by PLIP SO4.37: 2 residues within 4Å: Chain L: R.172 Chain N: K.25 Ligand excluded by PLIP SO4.38: 7 residues within 4Å: Chain L: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.39: 2 residues within 4Å: Chain L: H.78, S.80 Ligand excluded by PLIP SO4.40: 3 residues within 4Å: Chain L: V.91, D.92, K.93 Ligand excluded by PLIP SO4.41: 2 residues within 4Å: Chain L: K.25 Chain M: R.172 Ligand excluded by PLIP SO4.42: 1 residues within 4Å: Chain M: H.174 Ligand excluded by PLIP SO4.43: 6 residues within 4Å: Chain M: M.17, K.35, T.36, F.42 Chain N: Y.137, Q.180 Ligand excluded by PLIP SO4.44: 7 residues within 4Å: Chain M: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.45: 3 residues within 4Å: Chain N: D.143, V.144, S.145 Ligand excluded by PLIP SO4.46: 5 residues within 4Å: Chain L: Y.137, Q.180 Chain N: M.17, T.36, F.42 Ligand excluded by PLIP SO4.47: 7 residues within 4Å: Chain N: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.48: 4 residues within 4Å: Chain G: Q.180 Chain O: K.35, T.36, F.42 Ligand excluded by PLIP SO4.49: 7 residues within 4Å: Chain O: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.50: 5 residues within 4Å: Chain P: K.35, T.36, F.42 Chain X: Y.137, Q.180 Ligand excluded by PLIP SO4.51: 3 residues within 4Å: Chain P: K.93, R.94, R.172 Ligand excluded by PLIP SO4.52: 7 residues within 4Å: Chain P: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.53: 4 residues within 4Å: Chain P: V.91, D.92, K.93, Q.95 Ligand excluded by PLIP SO4.55: 5 residues within 4Å: Chain Q: M.17, T.36, F.42 Chain R: Y.137, Q.180 Ligand excluded by PLIP SO4.56: 7 residues within 4Å: Chain Q: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.57: 4 residues within 4Å: Chain R: K.35, T.36 Chain S: Q.180, G.184 Ligand excluded by PLIP SO4.58: 7 residues within 4Å: Chain R: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.59: 2 residues within 4Å: Chain R: D.143, V.144 Ligand excluded by PLIP SO4.60: 5 residues within 4Å: Chain Q: Y.137, Q.180, G.184 Chain S: K.35, T.36 Ligand excluded by PLIP SO4.61: 7 residues within 4Å: Chain S: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.62: 2 residues within 4Å: Chain S: D.143, V.144 Ligand excluded by PLIP SO4.63: 5 residues within 4Å: Chain T: M.17, K.35, T.36, F.42 Chain U: Q.180 Ligand excluded by PLIP SO4.64: 2 residues within 4Å: Chain T: R.172 Chain V: K.25 Ligand excluded by PLIP SO4.65: 7 residues within 4Å: Chain T: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.66: 2 residues within 4Å: Chain T: H.78, S.80 Ligand excluded by PLIP SO4.67: 3 residues within 4Å: Chain T: V.91, D.92, K.93 Ligand excluded by PLIP SO4.68: 2 residues within 4Å: Chain T: K.25 Chain U: R.172 Ligand excluded by PLIP SO4.69: 1 residues within 4Å: Chain U: H.174 Ligand excluded by PLIP SO4.70: 6 residues within 4Å: Chain U: M.17, K.35, T.36, F.42 Chain V: Y.137, Q.180 Ligand excluded by PLIP SO4.71: 7 residues within 4Å: Chain U: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.72: 3 residues within 4Å: Chain V: D.143, V.144, S.145 Ligand excluded by PLIP SO4.73: 5 residues within 4Å: Chain T: Y.137, Q.180 Chain V: M.17, T.36, F.42 Ligand excluded by PLIP SO4.74: 7 residues within 4Å: Chain V: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.75: 4 residues within 4Å: Chain O: Q.180 Chain W: K.35, T.36, F.42 Ligand excluded by PLIP SO4.76: 7 residues within 4Å: Chain W: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.77: 5 residues within 4Å: Chain H: Y.137, Q.180 Chain X: K.35, T.36, F.42 Ligand excluded by PLIP SO4.78: 3 residues within 4Å: Chain X: K.93, R.94, R.172 Ligand excluded by PLIP SO4.79: 7 residues within 4Å: Chain X: E.9, I.37, K.41, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.80: 4 residues within 4Å: Chain X: V.91, D.92, K.93, Q.95 Ligand excluded by PLIP

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.27: 2 residues within 4Å: Chain H: R.94, R.172 Ligand excluded by PLIP CL.54: 2 residues within 4Å: Chain P: R.94, R.172 Ligand excluded by PLIP CL.81: 2 residues within 4Å: Chain X: R.94, R.172 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, N.P. et al., Computational design of self-assembling protein nanomaterials with atomic level accuracy. Science (2012)

Release Date

2012-06-06

Peptides

Propanediol utilization polyhedral body protein PduT: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
A

J
B

K
C

L
D

M
E

N
F

O
G

P
H

Q
A

R
B

S
C

T
D

U
E

V
F

W
G

X
H

Propanediol utilization polyhedral body protein PduT

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