SMTL ID : 4ddf.2 (1 other biounit)

Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group P4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

homo-24-mer

Ligands

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.3: 7 residues within 4Å: Chain B: E.9, I.37, K.41, F.130, G.131, I.132, G.133 Ligand excluded by PLIP SO4.5: 8 residues within 4Å: Chain C: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain D: E.9, K.41, F.130, G.131, I.132, G.133 Ligand excluded by PLIP SO4.9: 7 residues within 4Å: Chain E: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.11: 8 residues within 4Å: Chain F: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.13: 7 residues within 4Å: Chain G: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.15: 7 residues within 4Å: Chain H: E.9, I.37, K.41, F.130, G.131, I.132, G.133 Ligand excluded by PLIP SO4.17: 8 residues within 4Å: Chain I: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain J: E.9, K.41, F.130, G.131, I.132, G.133 Ligand excluded by PLIP SO4.21: 7 residues within 4Å: Chain K: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.23: 8 residues within 4Å: Chain L: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.25: 7 residues within 4Å: Chain M: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.27: 7 residues within 4Å: Chain N: E.9, I.37, K.41, F.130, G.131, I.132, G.133 Ligand excluded by PLIP SO4.29: 8 residues within 4Å: Chain O: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.31: 6 residues within 4Å: Chain P: E.9, K.41, F.130, G.131, I.132, G.133 Ligand excluded by PLIP SO4.33: 7 residues within 4Å: Chain Q: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.35: 8 residues within 4Å: Chain R: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.37: 7 residues within 4Å: Chain S: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.39: 7 residues within 4Å: Chain T: E.9, I.37, K.41, F.130, G.131, I.132, G.133 Ligand excluded by PLIP SO4.41: 8 residues within 4Å: Chain U: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.43: 6 residues within 4Å: Chain V: E.9, K.41, F.130, G.131, I.132, G.133 Ligand excluded by PLIP SO4.45: 7 residues within 4Å: Chain W: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.47: 8 residues within 4Å: Chain X: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain C: H.78, P.79, S.80 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain D: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain E: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain F: S.80 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain G: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain H: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain I: H.78, P.79, S.80 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain J: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.22: 4 residues within 4Å: Chain K: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.24: 1 residues within 4Å: Chain L: S.80 Ligand excluded by PLIP CL.26: 4 residues within 4Å: Chain M: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.28: 4 residues within 4Å: Chain N: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain O: H.78, P.79, S.80 Ligand excluded by PLIP CL.32: 4 residues within 4Å: Chain P: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.34: 4 residues within 4Å: Chain Q: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.36: 1 residues within 4Å: Chain R: S.80 Ligand excluded by PLIP CL.38: 4 residues within 4Å: Chain S: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.40: 4 residues within 4Å: Chain T: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.42: 3 residues within 4Å: Chain U: H.78, P.79, S.80 Ligand excluded by PLIP CL.44: 4 residues within 4Å: Chain V: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.46: 4 residues within 4Å: Chain W: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.48: 1 residues within 4Å: Chain X: S.80 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, N.P. et al., Computational design of self-assembling protein nanomaterials with atomic level accuracy. Science (2012)

Release Date

2012-06-06

Peptides

Propanediol utilization polyhedral body protein PduT: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

D
J

E
K

F
L

G
G

H
H

I
I

J
J

K
K

L
L

M
G

N
H

O
I

P
J

Q
K

R
L

S
G

T
H

U
I

V
J

W
K

X
L

Propanediol utilization polyhedral body protein PduT

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