SMTL ID : 4ddf.1 (1 other biounit)

Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group P4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

homo-24-mer

Ligands

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.3: 7 residues within 4Å: Chain B: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.6: 7 residues within 4Å: Chain C: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.7: 5 residues within 4Å: Chain A: Y.137 Chain C: M.17, K.35, T.36, F.42 Ligand excluded by PLIP SO4.9: 8 residues within 4Å: Chain D: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.10: 8 residues within 4Å: Chain E: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.13: 8 residues within 4Å: Chain G: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.15: 7 residues within 4Å: Chain H: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.18: 7 residues within 4Å: Chain I: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain G: Y.137 Chain I: M.17, K.35, T.36, F.42 Ligand excluded by PLIP SO4.21: 8 residues within 4Å: Chain J: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.22: 8 residues within 4Å: Chain K: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.25: 8 residues within 4Å: Chain M: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.27: 7 residues within 4Å: Chain N: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.30: 7 residues within 4Å: Chain O: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.31: 5 residues within 4Å: Chain M: Y.137 Chain O: M.17, K.35, T.36, F.42 Ligand excluded by PLIP SO4.33: 8 residues within 4Å: Chain P: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.34: 8 residues within 4Å: Chain Q: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.37: 8 residues within 4Å: Chain S: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.39: 7 residues within 4Å: Chain T: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.42: 7 residues within 4Å: Chain U: E.9, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.43: 5 residues within 4Å: Chain S: Y.137 Chain U: M.17, K.35, T.36, F.42 Ligand excluded by PLIP SO4.45: 8 residues within 4Å: Chain V: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP SO4.46: 8 residues within 4Å: Chain W: E.9, I.37, K.41, F.130, G.131, I.132, G.133, G.134 Ligand excluded by PLIP

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain B: T.36 Chain C: Y.137 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: P.79, S.80 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain C: H.78, P.79, S.80 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain E: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain F: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain G: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain H: T.36 Chain I: Y.137 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain H: P.79, S.80 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain I: H.78, P.79, S.80 Ligand excluded by PLIP CL.23: 4 residues within 4Å: Chain K: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.24: 4 residues within 4Å: Chain L: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.26: 4 residues within 4Å: Chain M: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.28: 2 residues within 4Å: Chain N: T.36 Chain O: Y.137 Ligand excluded by PLIP CL.29: 2 residues within 4Å: Chain N: P.79, S.80 Ligand excluded by PLIP CL.32: 3 residues within 4Å: Chain O: H.78, P.79, S.80 Ligand excluded by PLIP CL.35: 4 residues within 4Å: Chain Q: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.36: 4 residues within 4Å: Chain R: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.38: 4 residues within 4Å: Chain S: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.40: 2 residues within 4Å: Chain T: T.36 Chain U: Y.137 Ligand excluded by PLIP CL.41: 2 residues within 4Å: Chain T: P.79, S.80 Ligand excluded by PLIP CL.44: 3 residues within 4Å: Chain U: H.78, P.79, S.80 Ligand excluded by PLIP CL.47: 4 residues within 4Å: Chain W: H.78, P.79, S.80, V.116 Ligand excluded by PLIP CL.48: 4 residues within 4Å: Chain X: H.78, P.79, S.80, V.116 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, N.P. et al., Computational design of self-assembling protein nanomaterials with atomic level accuracy. Science (2012)

Release Date

2012-06-06

Peptides

Propanediol utilization polyhedral body protein PduT: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

M
A

N
B

O
C

P
D

Q
E

R
F

S
A

T
B

U
C

V
D

W
E

X
F

Propanediol utilization polyhedral body protein PduT

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