SMTL ID : 3vhw.1

Crystal structure of the human vitamin D receptor ligand binding domain complexed with 4-MP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

monomer

Ligands

1 x VHW: methyl (1S,3E)-3-{(2R)-2-[(1R,3aS,4E,7aR)-4-{(2Z)-2-[(3R,4S,5R)-3,5-dihydroxy-4-(3-hydroxypropoxy)-2-methylidenecyclohexylidene]ethylidene}-7a-methyloctahydro-1H-inden-1-yl]propylidene}-1-ethyl-2-oxocyclopentanecarboxylate (non-preferred name)(Non-covalent)

VHW.1: 29 residues within 4Å: Chain A: T.29, Y.30, D.31, Y.34, F.37, L.63, A.67, L.69, V.70, Y.72, S.73, K.76, I.104, I.107, R.110, S.111, S.114, W.122, C.124, V.136, A.139, H.141, L.145, L.149, H.233, Y.237, L.240, V.254, F.258 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:F.37, A:L.69, A:L.69, A:V.70, A:Y.72, A:W.122, A:V.136, A:V.136, A:L.145, A:L.149, A:V.254, A:F.258 Hydrogen bonds: A:T.29, A:D.31, A:S.73, A:R.110, A:R.110, A:S.114, A:S.114 Salt bridges: A:H.141, A:H.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saito, H. et al., Synthesis of novel C-2 substituted vitamin D derivatives having ringed side chains and their biological evaluation on bone. J.Steroid Biochem.Mol.Biol. (2013)

Release Date

2013-03-06

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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