SMTL ID : 3vkl.2 (1 other biounit)

Protease-resistant mutant form of human Galectin-8 in complex with two lactose molecules

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

2 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.1: 9 residues within 4Å: Chain A: R.45, H.65, N.67, R.69, V.77, N.79, W.86, E.89 Ligands: EDO.8 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.69, A:R.69, A:R.45, A:R.45, A:R.69, A:N.79, A:E.89 Water bridges: A:R.45, A:R.59 BGC-GAL.2: 7 residues within 4Å: Chain A: H.203, N.205, R.207, N.216, W.223, E.226, R.228 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.207, A:R.207, A:E.226, A:R.228, A:N.205, A:R.207, A:N.216, A:E.226 Water bridges: A:N.205, A:R.207

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: R.88, E.90, L.125, Y.126, G.127, R.129 Ligands: EDO.7 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.88, A:L.125, A:G.127, A:R.129 Water bridges: A:R.129 EDO.4: 3 residues within 4Å: Chain A: S.102, F.103, N.119 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.102 EDO.5: 5 residues within 4Å: Chain A: I.12, F.19, G.21, T.22, P.24 No protein-ligand interaction detected (PLIP) EDO.6: 1 residues within 4Å: Chain A: H.147 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain A: T.92, T.123, L.124, L.125 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.123, A:L.125 EDO.8: 6 residues within 4Å: Chain A: N.79, W.86, G.87, E.89 Ligands: BGC-GAL.1, BGC-GAL.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.79 EDO.9: 2 residues within 4Å: Chain A: H.128, R.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.129 EDO.10: 2 residues within 4Å: Chain A: V.288, R.289 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.7, A:V.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, H. et al., X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains. Febs J. (2012)

Release Date

2012-09-12

Peptides

Galectin-8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Galectin-8

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