SMTL ID : 3vkm.1 (1 other biounit)

Protease-resistant mutant form of Human Galectin-8 in complex with sialyllactose and lactose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

monomer

Ligands

1 x BGC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-SIA.1: 9 residues within 4Å: Chain A: R.45, Q.47, R.59, H.65, N.67, R.69, N.79, W.86, E.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.69, A:R.69, A:E.89, A:R.45, A:R.45, A:R.69, A:N.79, A:Q.47 Water bridges: A:R.45 Salt bridges: A:R.59

1 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.2: 7 residues within 4Å: Chain A: H.203, N.205, R.207, N.216, W.223, E.226, R.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.207, A:R.207, A:E.226, A:E.226, A:R.228, A:R.207, A:N.216

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: R.36, S.102, F.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.103 EDO.4: 5 residues within 4Å: Chain A: V.176, K.178, E.287, R.289, W.291 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.287, A:R.289 EDO.5: 7 residues within 4Å: Chain A: L.3, L.5, N.6, N.7, L.8, S.152 Ligands: EDO.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.7 EDO.6: 3 residues within 4Å: Chain A: D.94, P.96, K.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.95, A:K.121 EDO.7: 2 residues within 4Å: Chain A: N.14, H.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.14 Water bridges: A:S.148 EDO.8: 3 residues within 4Å: Chain A: G.53, S.54, S.55 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.54, A:S.54, A:S.55 EDO.9: 3 residues within 4Å: Chain A: R.250, E.251, E.263 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.250 EDO.10: 4 residues within 4Å: Chain A: N.182, N.184, A.185, D.282 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.182, A:N.182, A:N.184 Water bridges: A:D.282 EDO.11: 4 residues within 4Å: Chain A: E.226, E.227, R.228, N.229 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.228, A:N.229 EDO.12: 3 residues within 4Å: Chain A: H.38, P.40, S.41 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.41 EDO.13: 6 residues within 4Å: Chain A: S.4, L.5, V.288, R.289, S.290 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.4, A:S.4, A:S.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, H. et al., X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains. Febs J. (2012)

Release Date

2012-09-12

Peptides

Galectin-8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin-8

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