SMTL ID : 3vkm.2 (1 other biounit)

Protease-resistant mutant form of Human Galectin-8 in complex with sialyllactose and lactose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

monomer

Ligands

1 x BGC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-SIA.1: 10 residues within 4Å: Chain A: R.45, Q.47, R.59, H.65, N.67, R.69, V.77, N.79, W.86, E.89 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.69, A:R.69, A:E.89, A:R.45, A:R.45, A:N.67, A:R.69, A:N.79, A:E.89, A:Q.47, A:R.59, A:W.86 Salt bridges: A:R.59, A:H.65

1 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.2: 7 residues within 4Å: Chain A: H.203, N.205, R.207, N.216, W.223, E.226, R.228 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.207, A:R.207, A:R.228, A:R.207, A:N.216, A:E.226

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: L.124, L.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.125 EDO.4: 3 residues within 4Å: Chain A: P.18, Y.141, G.142 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.142, A:G.142 EDO.5: 3 residues within 4Å: Chain A: M.1, M.108, R.289 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.289 EDO.6: 2 residues within 4Å: Chain A: R.289, W.291 No protein-ligand interaction detected (PLIP) EDO.7: 4 residues within 4Å: Chain A: I.12, F.19, G.21, T.22 No protein-ligand interaction detected (PLIP) EDO.8: 4 residues within 4Å: Chain A: R.215, N.229, L.262, E.263 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.263 EDO.9: 2 residues within 4Å: Chain A: R.36, H.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.36, A:F.103 EDO.10: 2 residues within 4Å: Chain A: F.218, W.223 No protein-ligand interaction detected (PLIP) EDO.11: 1 residues within 4Å: Chain A: K.198 No protein-ligand interaction detected (PLIP) EDO.12: 2 residues within 4Å: Chain A: D.44, R.99 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.99, A:R.99 EDO.13: 1 residues within 4Å: Chain A: S.55 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.55 EDO.14: 6 residues within 4Å: Chain A: D.248, V.249, R.250, E.251, K.253, E.263 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.249, A:R.250, A:K.253, A:K.253 EDO.15: 2 residues within 4Å: Chain A: M.2, N.119 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, H. et al., X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains. Febs J. (2012)

Release Date

2012-09-12

Peptides

Galectin-8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Galectin-8

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