SMTL ID : 3w2s.1

EGFR kinase domain with compound4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x W2R: 1-{3-[2-chloro-4-({5-[2-(2-hydroxyethoxy)ethyl]-5H-pyrrolo[3,2-d]pyrimidin-4-yl}amino)phenoxy]phenyl}-3-cyclohexylurea(Non-covalent)

W2R.1: 19 residues within 4Å: Chain A: F.31, V.34, A.51, K.53, L.55, M.74, L.96, T.98, Q.99, L.100, M.101, R.149, N.150, L.152, T.162, D.163, F.164, G.165, L.170 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.31, A:V.34, A:A.51, A:L.55, A:L.96, A:T.98, A:T.162 Hydrogen bonds: A:M.101, A:D.163, A:F.164, A:G.165 pi-Stacking: A:F.164 pi-Cation interactions: A:K.53 Halogen bonds: A:L.96

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.111, K.221 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.111 Salt bridges: A:R.111, A:K.221 SO4.3: 5 residues within 4Å: Chain A: P.298, D.302, S.303, N.304, F.305 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.113, A:N.304, A:N.304, A:F.305

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sogabe, S. et al., Structure-Based Approach for the Discovery of Pyrrolo[3,2-d]pyrimidine-Based EGFR T790M/L858R Mutant Inhibitors. Acs Med.Chem.Lett. (2013)

Release Date

2013-01-16

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epidermal growth factor receptor

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