SMTL ID : 3woc.2 (8 other biounits)

Crystal structure of a prostate-specific WGA16 glycoprotein lectin, form II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.32, P.33, V.34, L.36, K.38, Y.125 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.32, A:V.34, A:V.34 Salt bridges: A:K.38

2 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.2: 5 residues within 4Å: Chain A: M.5, Y.13, F.14, I.15, G.120 No protein-ligand interaction detected (PLIP) DIO.3: 5 residues within 4Å: Chain A: K.18, E.21, G.23, H.69, P.137 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.18

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: Q.4, F.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garenaux, E. et al., Discovery, Primary, and Crystal Structures and Capacitation-related Properties of a Prostate-derived Heparin-binding Protein WGA16 from Boar Sperm. J.Biol.Chem. (2015)

Release Date

2014-12-31

Peptides

hypothetical protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

hypothetical protein

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