SMTL ID : 3woc.7 (8 other biounits)

Crystal structure of a prostate-specific WGA16 glycoprotein lectin, form II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.32, P.33, V.34, L.36, K.38 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.34 Salt bridges: A:K.38 SO4.11: 3 residues within 4Å: Chain B: K.51, P.55, G.56 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.56 Salt bridges: B:K.51

10 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.2: 6 residues within 4Å: Chain A: G.1, S.2, G.3, I.15 Chain B: Y.119 Ligands: DIO.3 No protein-ligand interaction detected (PLIP) DIO.3: 10 residues within 4Å: Chain A: M.5, Y.13, F.14 Chain B: M.5, Y.13, F.14, I.15, Y.119 Ligands: DIO.2, DIO.13 No protein-ligand interaction detected (PLIP) DIO.4: 3 residues within 4Å: Chain A: L.36, F.80, Y.125 No protein-ligand interaction detected (PLIP) DIO.5: 5 residues within 4Å: Chain A: G.1, T.16, S.49, E.50, Y.52 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.16, A:E.50 DIO.6: 10 residues within 4Å: Chain A: M.5, F.6, G.7, G.9, K.10, G.11, Y.13 Chain B: Q.121, T.128, G.129 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.121, A:G.9 DIO.7: 7 residues within 4Å: Chain A: K.18, E.21, T.22, G.23, H.69, P.137, R.138 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.23 DIO.8: 4 residues within 4Å: Chain A: G.11, Q.121, W.123, T.128 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.11 DIO.9: 1 residues within 4Å: Chain A: R.92 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.92 DIO.12: 4 residues within 4Å: Chain B: G.11, Q.121, W.123, T.128 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.11 DIO.13: 5 residues within 4Å: Chain A: Y.119 Chain B: S.2, G.3, I.15 Ligands: DIO.3 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 7 residues within 4Å: Chain A: A.106, A.107, Y.119, G.131, F.132, W.134 Chain B: F.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.107, A:Y.119, A:Y.119, A:F.132, A:F.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garenaux, E. et al., Discovery, Primary, and Crystal Structures and Capacitation-related Properties of a Prostate-derived Heparin-binding Protein WGA16 from Boar Sperm. J.Biol.Chem. (2015)

Release Date

2014-12-31

Peptides

hypothetical protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

hypothetical protein

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