SMTL ID : 3woc.9 (8 other biounits)

Crystal structure of a prostate-specific WGA16 glycoprotein lectin, form II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.32, P.33, V.34, K.38, Y.125 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.34 Salt bridges: A:K.38 SO4.2: 6 residues within 4Å: Chain B: G.32, P.33, V.34, L.36, K.38, Y.125 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.34 Salt bridges: B:K.38

2 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.3: 4 residues within 4Å: Chain B: A.107, P.108, N.109 Ligands: DIO.4 No protein-ligand interaction detected (PLIP) DIO.4: 7 residues within 4Å: Chain A: Q.4, F.6 Chain B: A.106, A.107, F.132, W.134 Ligands: DIO.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garenaux, E. et al., Discovery, Primary, and Crystal Structures and Capacitation-related Properties of a Prostate-derived Heparin-binding Protein WGA16 from Boar Sperm. J.Biol.Chem. (2015)

Release Date

2014-12-31

Peptides

hypothetical protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
F

hypothetical protein

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