SMTL ID : 3wwr.1

Crystal structure of the human vitamin D receptor ligand binding domain complexed with 1-((((1S,2R,6R,Z)-2,6-dihydroxy-4-((E)-2-((1R,3aS,7aR)-1-((R)-6-hydroxy-6-methylheptan-2-yl)-7a-methylhexahydro-1H-inden-4(2H)-ylidene)ethylidene)-3-methylenecyclohexyl)oxy)methyl)cyclopropanecarbonitrile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.18 Å

Oligo State

monomer

Ligands

1 x 3AJ: 1-({[(1R,2S,3R,5Z,7E,14beta,17alpha)-1,3,25-trihydroxy-9,10-secocholesta-5,7,10-trien-2-yl]oxy}methyl)cyclopropanecarbonitrile(Non-covalent)

3AJ.1: 20 residues within 4Å: Chain A: T.29, Y.30, D.31, Y.34, L.63, V.70, Y.72, S.73, K.76, I.107, R.110, S.111, S.114, W.122, C.124, V.136, H.141, L.149, H.233, V.254 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.30, A:D.31, A:Y.34, A:L.63, A:W.122, A:V.136, A:L.149, A:V.254 Hydrogen bonds: A:Y.30, A:S.73, A:R.110, A:R.110, A:S.114, A:H.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saitoh, H. et al., Synthesis and biological activities of vitamin D3 derivatives with cyanoalkyl side chain at C-2 position. J.Steroid Biochem.Mol.Biol. (2015)

Release Date

2014-12-31

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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