SMTL ID : 3x31.1

Crystal structure of the human vitamin D receptor ligand binding domain complexed with 7,8-cis-14-epi-1a,25-Dihydroxy-19-norvitamin D3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x 41V: (1R,3R,7Z,14beta,17alpha)-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-9,10-secoestra-5,7-diene-1,3-diol(Non-covalent)

41V.1: 17 residues within 4Å: Chain A: Y.30, L.63, V.70, S.73, I.104, I.107, R.110, S.111, S.114, W.122, C.124, Y.131, V.136, H.141, L.145, H.233, L.240 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.30, A:L.63, A:V.70, A:I.104, A:I.107, A:W.122, A:W.122, A:Y.131, A:V.136, A:L.145, A:L.240 Hydrogen bonds: A:R.110, A:S.114, A:S.114, A:H.233 Water bridges: A:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sawada, D. et al., Revisiting the 7,8-cis-vitamin D3 derivatives: synthesis, evaluating the biological activity, and study of the binding configuration. To be Published

Release Date

2016-01-13

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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