SMTL ID : 3x3x.2 (1 other biounit)

Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: Y.374, H.423, H.425, H.584 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.423, A:H.425, A:H.584 CU.5: 4 residues within 4Å: Chain B: Y.374, H.423, H.425, H.584 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.423, B:H.425, B:H.584

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: R.41, D.432, M.433, F.438, D.573, I.574 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.41, A:D.573, A:D.573, A:I.574 NA.6: 6 residues within 4Å: Chain B: R.41, D.432, M.433, F.438, D.573, I.574 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.41, B:I.574, B:I.574

2 x PEL: 2-PHENYL-ETHANOL(Non-covalent)

PEL.3: 11 residues within 4Å: Chain A: F.97, A.127, P.128, L.129, W.160, Y.288, D.290, Y.294, I.371, G.372, N.373 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.97, A:A.127, A:P.128, A:L.129, A:W.160, A:Y.288, A:Y.294 Hydrogen bonds: A:D.290 Water bridges: A:N.373 PEL.7: 11 residues within 4Å: Chain B: F.97, A.127, P.128, L.129, W.160, Y.288, D.290, Y.294, I.371, G.372, N.373 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.97, B:A.127, B:P.128, B:L.129, B:W.160, B:Y.288, B:Y.294 Hydrogen bonds: B:D.290 Water bridges: B:N.373

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: D.340, W.341, G.342 Chain B: E.339, W.341, R.362, E.391, K.393 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.362, B:K.393, B:K.393 Water bridges: B:Y.381, A:D.340 GOL.8: 8 residues within 4Å: Chain A: E.339, W.341, R.362, E.391, K.393 Chain B: D.340, W.341, G.342 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Water bridges: B:D.340, B:D.340, A:Y.381 Hydrogen bonds: A:R.362, A:K.393, A:K.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murakawa, T. et al., Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions. J.Biol.Chem. (2015)

Release Date

2015-08-19

Peptides

Phenylethylamine oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Phenylethylamine oxidase

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