SMTL ID : 3zcu.1

Rabbit muscle glycogen phosphorylase b in complex with N-(pyridyl-2- carbonyl)-N-beta-D-glucopyranosyl urea determined at 2.05 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x T68: N-[(pyridin-2-ylcarbonyl)carbamoyl]-beta-D-glucopyranosylamine(Non-covalent)

T68.1: 17 residues within 4Å: Chain A: E.89, N.134, G.136, L.137, L.140, N.283, D.284, H.342, H.378, V.456, N.485, Y.574, E.673, A.674, S.675, G.676, T.677 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:D.284 Hydrogen bonds: A:G.136, A:L.137, A:N.485, A:E.673, A:E.673, A:A.674, A:S.675, A:S.675, A:G.676 Water bridges: A:N.134, A:G.138, A:H.378, A:Y.574, A:T.677 pi-Cation interactions: A:H.342 T68.3: 17 residues within 4Å: Chain B: E.89, N.134, G.136, L.137, L.140, N.283, D.284, H.342, H.378, V.456, N.485, Y.574, E.673, A.674, S.675, G.676, T.677 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:D.284 Hydrogen bonds: B:G.136, B:L.137, B:H.378, B:N.485, B:E.673, B:A.674, B:S.675, B:S.675, B:G.676 Water bridges: B:N.134, B:G.138, B:D.284, B:H.378, B:Y.574, B:Y.574, B:Y.574, B:T.677 pi-Cation interactions: B:H.342

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.2: 15 residues within 4Å: Chain A: Y.91, G.135, G.136, W.492, V.568, K.569, K.575, Y.649, R.650, V.651, A.654, G.676, T.677, G.678, K.681 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.91, A:Y.649, A:V.651, A:K.681 Hydrogen bonds: A:T.677, A:G.678 Water bridges: A:G.136, A:K.569, A:K.569, A:K.575, A:K.575, A:N.679 Salt bridges: A:K.569, A:K.575 PLP.4: 15 residues within 4Å: Chain B: Y.91, G.135, G.136, W.492, V.568, K.569, K.575, Y.649, R.650, V.651, A.654, G.676, T.677, G.678, K.681 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:Y.91, B:Y.649, B:V.651, B:K.681 Hydrogen bonds: B:Y.649, B:T.677, B:G.678, B:K.681 Water bridges: B:G.136, B:K.569, B:K.569, B:K.575, B:K.575, B:N.679 Salt bridges: B:K.569, B:K.575

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chrysina, E.D. et al., Synthesis, Kinetic, Computational and Crystallographic Evaluation of N-Acyl-N-Beta-D- Glucopyranosyl)Ureas, Nanomolar Glucose Analogue Inhibitors of Glycogen Phosphorylase, Potential Antidiabetic Agents. To be Published

Release Date

2013-12-11

Peptides

GLYCOGEN PHOSPHORYLASE, MUSCLE FORM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

GLYCOGEN PHOSPHORYLASE, MUSCLE FORM

Related Entries With Identical Sequence