- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-11-mer
- Ligands
- 11 x NA: SODIUM ION(Non-functional Binders)
- 11 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
DMU.2: 6 residues within 4Å:- Chain A: I.9, C.13
- Chain K: I.9, C.13
- Ligands: DMU.4, DMU.24
3 PLIP interactions:1 interactions with chain K, 2 interactions with chain A- Hydrophobic interactions: K:I.9, A:I.9, A:I.9
DMU.4: 9 residues within 4Å:- Chain A: M.1, T.5, C.13
- Chain B: D.2, I.9, C.13, V.16
- Ligands: DMU.2, DMU.7
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:I.9, B:I.9, B:V.16
- Hydrogen bonds: A:M.1
DMU.7: 10 residues within 4Å:- Chain B: M.1, I.9, C.13
- Chain C: M.1, D.2, T.5, I.9, V.16
- Ligands: DMU.4, DMU.9
10 PLIP interactions:4 interactions with chain B, 6 interactions with chain C- Hydrophobic interactions: B:I.9, B:I.9, C:I.9, C:I.9, C:V.16
- Hydrogen bonds: B:M.1, C:D.2, C:D.2, C:T.5
- Water bridges: B:T.5
DMU.9: 9 residues within 4Å:- Chain C: M.1, I.9, C.13
- Chain D: D.2, T.5, I.9, C.13
- Ligands: DMU.7, DMU.11
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:M.1, C:M.1, D:T.5
- Hydrophobic interactions: D:I.9
DMU.11: 8 residues within 4Å:- Chain D: M.1, I.9, C.13
- Chain E: T.5, I.9, C.13
- Ligands: DMU.9, DMU.13
7 PLIP interactions:4 interactions with chain E, 3 interactions with chain D- Hydrophobic interactions: E:I.9, E:I.9, D:I.9
- Hydrogen bonds: E:T.5, E:T.5, D:M.1, D:M.1
DMU.13: 6 residues within 4Å:- Chain E: M.1, I.9, C.13
- Chain F: V.16
- Ligands: DMU.11, DMU.15
5 PLIP interactions:2 interactions with chain E, 3 interactions with chain F- Hydrophobic interactions: E:I.9, F:V.16
- Hydrogen bonds: E:M.1
- Water bridges: F:T.5, F:T.5
DMU.15: 8 residues within 4Å:- Chain F: M.1, I.9, C.13
- Chain G: T.5, I.9, C.13
- Ligands: DMU.13, DMU.18
6 PLIP interactions:2 interactions with chain F, 4 interactions with chain G- Hydrophobic interactions: F:I.9, F:I.9, G:T.5, G:I.9, G:I.9
- Hydrogen bonds: G:T.5
DMU.18: 7 residues within 4Å:- Chain G: M.1, I.9
- Chain H: M.1, T.5, I.9
- Ligands: DMU.15, DMU.20
7 PLIP interactions:3 interactions with chain H, 4 interactions with chain G- Hydrophobic interactions: H:T.5, H:I.9, H:I.9, G:I.9, G:I.9
- Hydrogen bonds: G:M.1, G:M.1
DMU.20: 7 residues within 4Å:- Chain H: M.1, I.9, C.13
- Chain I: T.5, C.13
- Ligands: DMU.18, DMU.22
3 PLIP interactions:3 interactions with chain H- Hydrophobic interactions: H:I.9
- Hydrogen bonds: H:M.1, H:M.1
DMU.22: 11 residues within 4Å:- Chain I: M.1, I.9, C.13
- Chain J: M.1, D.2, T.5, I.9, C.13, V.16
- Ligands: DMU.20, DMU.24
6 PLIP interactions:4 interactions with chain J, 2 interactions with chain I- Hydrophobic interactions: J:I.9, J:V.16, I:I.9
- Hydrogen bonds: J:D.2, J:D.2, I:M.1
DMU.24: 4 residues within 4Å:- Chain J: C.13
- Chain K: T.5
- Ligands: DMU.2, DMU.22
No protein-ligand interaction detected (PLIP)- 2 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
TAM.5: 2 residues within 4Å:- Chain B: K.87
- Chain C: Y.80
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:Y.80, C:Y.80, B:K.87
- Water bridges: C:N.82
TAM.16: 3 residues within 4Å:- Chain F: S.55, L.59
- Chain G: R.50
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:R.50
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schulz, S. et al., A New Type of Na(+)-Driven ATP Synthase Membrane Rotor with a Two-Carboxylate Ion-Coupling Motif. Plos Biol. (2013)
- Release Date
- 2013-05-29
- Peptides
- ATP SYNTHASE SUBUNIT C: ABCDEFGHIJK
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
ND
OE
PF
QG
RH
SI
TJ
UK
V - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-11-mer
- Ligands
- 11 x NA: SODIUM ION(Non-functional Binders)
- 11 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
- 2 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schulz, S. et al., A New Type of Na(+)-Driven ATP Synthase Membrane Rotor with a Two-Carboxylate Ion-Coupling Motif. Plos Biol. (2013)
- Release Date
- 2013-05-29
- Peptides
- ATP SYNTHASE SUBUNIT C: ABCDEFGHIJK
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
ND
OE
PF
QG
RH
SI
TJ
UK
V - Membrane
-
We predict this structure to be a membrane protein.