SMTL ID : 3zos.1 (1 other biounit)

Structure of the DDR1 kinase domain in complex with ponatinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

2 x 0LI: 3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide(Non-covalent)

0LI.1: 25 residues within 4Å: Chain A: L.18, A.55, V.56, K.57, E.74, I.77, M.78, L.81, I.86, I.87, M.101, T.103, D.104, Y.105, M.106, L.159, F.164, V.165, H.166, R.167, L.175, I.184, A.185, D.186, F.187 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.55, A:K.57, A:K.57, A:E.74, A:I.77, A:L.81, A:T.103, A:Y.105, A:D.186 Hydrogen bonds: A:E.74, A:M.106, A:D.186 pi-Cation interactions: A:H.166 Halogen bonds: A:I.184 0LI.4: 10 residues within 4Å: Chain A: V.201, A.205, L.207, C.216, I.217, L.218, G.220, F.222, I.256, F.263 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.207, A:L.218, A:F.263 Hydrogen bonds: A:I.217

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: W.214, E.215, K.221, R.292, E.293, S.294 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.293, A:S.294, A:S.294 EDO.3: 6 residues within 4Å: Chain A: F.23, G.24, E.25, K.57, I.58, S.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.190 Water bridges: A:K.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Canning, P. et al., Structural Mechanisms Determining Inhibition of the Collagen Receptor Ddr1 by Selective and Multi-Targeted Type II Kinase Inhibitors. J.Mol.Biol. (2014)

Release Date

2013-05-01

Peptides

EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1

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