SMTL ID : 6hp9.2 (1 other biounit)

Structure of the kinase domain of human DDR1 in complex with a 2-Amino-2,3-Dihydro-1H-Indene-5-Carboxamide-based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x GKB: (2~{R})-~{N}-[3-(4-methylimidazol-1-yl)-5-(trifluoromethyl)phenyl]-2-(pyrimidin-5-ylamino)-2,3-dihydro-1~{H}-indene-5-carboxamide(Non-covalent)

GKB.1: 20 residues within 4Å: Chain A: V.26, A.55, K.57, E.74, I.77, M.78, L.81, I.86, I.87, T.103, D.104, Y.105, M.106, F.164, H.166, L.175, I.184, A.185, D.186, F.187 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.26, A:K.57, A:E.74, A:I.77, A:I.87, A:T.103, A:D.186, A:F.187 Hydrogen bonds: A:E.74, A:E.74, A:T.103, A:T.103, A:M.106, A:D.186 Water bridges: A:K.57, A:R.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, D. et al., 2-Amino-2,3-dihydro-1H-indene-5-carboxamide-Based Discoidin Domain Receptor 1 (DDR1) Inhibitors: Design, Synthesis, and in Vivo Antipancreatic Cancer Efficacy. J.Med.Chem. (2019)

Release Date

2019-01-30

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Epithelial discoidin domain-containing receptor 1

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