SMTL ID : 3zov.1

CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH CHEMICAL LIGAND

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x WZV: 5-(2,2,2-Trifluoro-ethoxy)-pyridine-2-carboxylic acid [3-((S)-2-amino-1,4-dimethyl-6-oxo-1,4,5,6-tetrahydro-pyrimidin-4-yl)-phenyl]-amide(Non-covalent)

WZV.1: 19 residues within 4Å: Chain A: G.27, Q.28, G.29, Y.30, L.46, D.48, G.50, S.51, Y.87, F.124, I.126, I.134, D.244, S.245, G.246, T.247, T.248, A.351, E.355 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.124 Hydrogen bonds: A:G.246 Salt bridges: A:D.48, A:D.244

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: H.197, Y.200 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.200 NA.3: 2 residues within 4Å: Chain A: V.157, T.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.157

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 6 residues within 4Å: Chain A: T.98, R.112, A.113, N.114, E.150, Q.159 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banner, D.W. et al., Mapping the Conformational Space Accessible to Bace2 Using Surface Mutants and Co-Crystals with Fab-Fragments, Fynomers, and Xaperones. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-05-29

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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