SMTL ID : 4bek.1

CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH CHEMICAL LIGAND

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

monomer

Ligands

1 x XK0: (4S)-4-(4-methoxyphenyl)-4-methyl-5,6-dihydro-1,3-thiazin-2-amine(Non-covalent)

XK0.1: 11 residues within 4Å: Chain A: L.46, D.48, G.50, S.51, Y.87, F.124, W.131, I.134, D.244, G.246, T.247 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.46, A:Y.87, A:F.124, A:I.134 Hydrogen bonds: A:D.244, A:T.247

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: H.197, Y.200 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.197 NA.3: 2 residues within 4Å: Chain A: V.157, T.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.160

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: R.112, A.113, N.114, E.150, S.155 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.114, A:S.155 Water bridges: A:N.114 Salt bridges: A:E.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Woltering, T.J. et al., Bace1 Inhibitors: A Head Group Scan on a Series of Amides. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-06-19

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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